Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1701 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTGCTGTCTCTCCTTCAATTCCTGCAAATATTTTTCACTCCCCATCTCAGTATAACTATGGCATTTGCTATGGTGTTGATGGAGAACATGGTGGATTTTATTCACCATTGTCTGTGATGCCACTCAAGTCTGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCACCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGTATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTTTTCACATTTCTCATCCTTAAGAAGCCGTGAAGTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCACCCAACAGTGGCAGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGCTCCAAGGAATTATGCTGCCACTAGTAATGGTTCGTTCGAGCAGAAGATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTACCATTAATGCCATGACTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCGAGCTGTGTCACAGCCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATAGATACAAAGAAAAGAGGCCATGAGAAGTTGGATCAGAAGCAAATTGTTCACAGGAAGTCTTTAGATACCTTTGGGCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACTCACATTAACTTTCCTTTGGAAAATTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGGAGAAGCAGCGGGTTCTCAAGGGGGGCCTCTATTTACAGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACTTTCAGTACTCAAGAGGAAGCAGCCGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGACATCACGAGGTATGACGTGGAGCGGATCATTGCAAGCAATACGCTCCTTAGTGGCGATCTAGCTAAAAGAAAGCAGCAGCCAGAGTATGATAATGAATCTCTTAGACAAAGCCCTCCTACCCACATCAGCAATGCAGAAGCTATGCCTTTGCCCTCACAGAGTAGCCAAAATGAATCCGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCATTCCAAAACCTCGGTTGTTATCTGCGATAACCGATGATGGATCGCAACTAGGAGTCGAAGACTCGGCCAAAATGGGAGCTCATTTCTCGAATGCATCTTCAATGGTGACCAGCTGCAGCCTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGTCTTTCGATGGTGTTCGGAATGCCTCAACCGACATCTAAGCCGTTTGCTGCCCCGGCTAGTAATATGAACTCCTGGATTTCATCTGCCCAACAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCAGCCTGGACTGATACTTAA 1881 46.2 MNNVNGNNCNWLGFSVSPNVNMELSSSSATAVSPSIPANIFHSPSQYNYGICYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQPFSHFSSLRSREVMLQDSKVILPDGCNLQQQQHPTVAESEISGMKNWAAPRNYAATSNGSFEQKMVSCMSENGGESGTINAMTYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMADCSAIDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEYDNESLRQSPPTHISNAEAMPLPSQSSQNESDWKMALYQSSQQLIPKPRLLSAITDDGSQLGVEDSAKMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQPTSKPFAAPASNMNSWISSAQQLRAANCMSQLPVFAAWTDT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72988612 72992250 + Tan0010112.1 Tan03g1701 747205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1701 626 CDD AP2 392 453 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 SUPERFAMILY DNA-binding domain 392 452 IPR016177 GO:0003677(InterPro)
Tan03g1701 626 ProSiteProfiles AP2/ERF domain profile. 291 357 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 MobiDBLite consensus disorder prediction 472 509 - -
Tan03g1701 626 SUPERFAMILY DNA-binding domain 290 359 IPR016177 GO:0003677(InterPro)
Tan03g1701 626 SMART rav1_2 291 363 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 SMART rav1_2 393 457 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 Pfam AP2 domain 394 444 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 Pfam AP2 domain 291 349 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 221 507 - -
Tan03g1701 626 Coils Coil 358 378 - -
Tan03g1701 626 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 Gene3D AP2/ERF domain 290 359 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 MobiDBLite consensus disorder prediction 482 509 - -
Tan03g1701 626 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 FunFam AP2-like ethylene-responsive transcription factor 392 453 - -
Tan03g1701 626 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 PRINTS Ethylene responsive element binding protein signature 292 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1701 626 FunFam AP2-like ethylene-responsive transcription factor ANT 290 359 - -
Tan03g1701 626 CDD AP2 290 357 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1701 Tan-Chr3:72988612 Tan04g2797 Tan-Chr4:87505443 5.10E-100 dispersed
Tan03g1701 Tan-Chr3:72988612 Tan03g1702 Tan-Chr3:72989291 2.50E-301 tandem
Tan09g1597 Tan-Chr9:67738656 Tan03g1701 Tan-Chr3:72988612 6.40E-71 transposed
Tan01g4663 Tan-Chr1:112615755 Tan03g1701 Tan-Chr3:72988612 1.00E-139 wgd
Tan02g1691 Tan-Chr2:79514328 Tan03g1701 Tan-Chr3:72988612 7.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27012 PF00847 AP2 1.20E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1701 K09285 - csv:101203323 1158.67