Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1702 ATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGTATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTTTTCACATTTCTCATCCTTAAGAAGCCGTGAAGTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCACCCAACAGTGGCAGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGCTCCAAGGAATTATGCTGCCACTAGTAATGGTTCGTTCGAGCAGAAGATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTACCATTAATGCCATGACTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCGAGCTGTGTCACAGCCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATAGATACAAAGAAAAGAGGCCATGAGAAGTTGGATCAGAAGCAAATTGTTCACAGGAAGTCTTTAGATACCTTTGGGCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACTCACATTAACTTTCCTTTGGAAAATTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGGAGAAGCAGCGGGTTCTCAAGGGGGGCCTCTATTTACAGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACTTTCAGTACTCAAGAGGAAGCAGCCGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGACATCACGAGGTATGACGTGGAGCGGATCATTGCAAGCAATACGCTCCTTAGTGGCGATCTAGCTAAAAGAAAGCAGCAGCCAGAGTATGATAATGAATCTCTTAGACAAAGCCCTCCTACCCACATCAGCAATGCAGAAGCTATGCCTTTGCCCTCACAGAGTAGCCAAAATGAATCCGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCATTCCAAAACCTCGGTTGTTATCTGCGATAACCGATGATGGATCGCAACTAGGAGTCGAAGACTCGGCCAAAATGGGAGCTCATTTCTCGAATGCATCTTCAATGGTGACCAGCTGCAGCCTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGTCTTTCGATGGTGTTCGGAATGCCTCAACCGACATCTAAGCCGTTTGCTGCCCCGGCTAGTAATATGAACTCCTGGATTTCATCTGCCCAACAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCAGCCTGGACTGATACTTAA 1563 46.83 MGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQPFSHFSSLRSREVMLQDSKVILPDGCNLQQQQHPTVAESEISGMKNWAAPRNYAATSNGSFEQKMVSCMSENGGESGTINAMTYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMADCSAIDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEYDNESLRQSPPTHISNAEAMPLPSQSSQNESDWKMALYQSSQQLIPKPRLLSAITDDGSQLGVEDSAKMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQPTSKPFAAPASNMNSWISSAQQLRAANCMSQLPVFAAWTDT 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72989291 72992250 + Tan0010112.2 Tan03g1702 747206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1702 520 ProSiteProfiles AP2/ERF domain profile. 287 345 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 Gene3D AP2/ERF domain 287 347 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 Gene3D AP2/ERF domain 184 253 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 CDD AP2 184 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 PRINTS Ethylene responsive element binding protein signature 327 347 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 PRINTS Ethylene responsive element binding protein signature 186 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 CDD AP2 286 347 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 MobiDBLite consensus disorder prediction 366 403 - -
Tan03g1702 520 SMART rav1_2 287 351 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 SMART rav1_2 185 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 Pfam AP2 domain 185 243 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 Pfam AP2 domain 288 338 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 FunFam AP2-like ethylene-responsive transcription factor ANT 184 253 - -
Tan03g1702 520 MobiDBLite consensus disorder prediction 376 403 - -
Tan03g1702 520 SUPERFAMILY DNA-binding domain 286 346 IPR016177 GO:0003677(InterPro)
Tan03g1702 520 Coils Coil 252 272 - -
Tan03g1702 520 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 132 401 - -
Tan03g1702 520 ProSiteProfiles AP2/ERF domain profile. 185 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g1702 520 SUPERFAMILY DNA-binding domain 184 253 IPR016177 GO:0003677(InterPro)
Tan03g1702 520 FunFam AP2-like ethylene-responsive transcription factor 286 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4663 Tan-Chr1:112615755 Tan03g1702 Tan-Chr3:72989291 7.10E-125 dispersed
Tan02g1691 Tan-Chr2:79514328 Tan03g1702 Tan-Chr3:72989291 1.30E-141 dispersed
Tan03g1702 Tan-Chr3:72989291 Tan04g2797 Tan-Chr4:87505443 3.90E-98 dispersed
Tan03g1701 Tan-Chr3:72988612 Tan03g1702 Tan-Chr3:72989291 2.50E-301 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27013 PF00847 AP2 9.00E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1702 K09285 - csv:101203323 958.747