Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1718 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTATTGGGTTTGGGATGGACGTTTCCATCGAAACCCAACGATGATCTTTCTCAAAAACCCAAGAAGGCTGTGGATTTGTTCAGTTTTGCCGCCGCACAATCCGAGCCCTCTTTAACTTTGGCCCTTTCTACTGCCGACACTTACCCGCTGCCTGATTTGTGTCGCCAACCGTCGCCTCACAGCGCGGTTTCTTCCTTCTCTGGCGGCAGGGTCAAGCGTGAAAGAGATGTTTCTGCTGAGGATATTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGTGATGAAGATGAAGATGGGTCTAATGCCAGGAAAAAACTTAGGCTAACGAAAGAACAATCTGCCCTTTTGGAGGACAGCTTCAAACTTCACAGCACTCTCAATCCTAAGCAAAAACAAGCCTTAGCCAGGGAGTTGAATCTTCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACGAAGCTCAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGGAGGCTGCAAAAAGAACTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCTCTGTTCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCGTCCTGCGAGAGGATCGGCGGGGGCGGCGCCACCGTTAACGGGGACGGAAATCCCAAGGGCCCATTTTCGATGGCTCCCAAGCCCCGGTTTTACAAACCCTTCACCAATCCTTCTGCTGCTTGCTAA 789 49.94 MGFDDLSNTGLLLGLGWTFPSKPNDDLSQKPKKAVDLFSFAAAQSEPSLTLALSTADTYPLPDLCRQPSPHSAVSSFSGGRVKRERDVSAEDIEEEKASSRVSDEDEDGSNARKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGGATVNGDGNPKGPFSMAPKPRFYKPFTNPSAAC 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73128639 73130304 + Tan0012900.1 Tan03g1718 747222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1718 262 MobiDBLite consensus disorder prediction 60 116 - -
Tan03g1718 262 CDD homeodomain 113 170 IPR001356 GO:0003677(InterPro)
Tan03g1718 262 SMART halz 169 212 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g1718 262 Coils Coil 175 205 - -
Tan03g1718 262 FunFam Homeobox-leucine zipper protein 18 98 174 - -
Tan03g1718 262 Gene3D - 106 174 - -
Tan03g1718 262 Pfam Homeobox associated leucine zipper 169 203 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g1718 262 SMART HOX_1 111 173 IPR001356 GO:0003677(InterPro)
Tan03g1718 262 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677(InterPro)
Tan03g1718 262 SUPERFAMILY Homeodomain-like 104 170 IPR009057 -
Tan03g1718 262 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan03g1718 262 Pfam Homeodomain 113 167 IPR001356 GO:0003677(InterPro)
Tan03g1718 262 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 237 IPR050762 -
Tan03g1718 262 MobiDBLite consensus disorder prediction 80 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1718 Tan-Chr3:73128639 Tan06g0528 Tan-Chr6:4040918 4.90E-57 dispersed
Tan01g2068 Tan-Chr1:23654003 Tan03g1718 Tan-Chr3:73128639 1.30E-52 transposed
Tan11g1807 Tan-Chr11:20164424 Tan03g1718 Tan-Chr3:73128639 6.30E-35 transposed
Tan01g1446 Tan-Chr1:14509664 Tan03g1718 Tan-Chr3:73128639 2.60E-85 wgd
Tan01g4653 Tan-Chr1:112426228 Tan03g1718 Tan-Chr3:73128639 2.40E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27016 PF00046 Homeodomain 5.20E-16 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1718 K09338 - csv:101218782 434.491