Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g1733 | ATGGCTGCTTCTTCTTCCTCATCGCACATCATTTCATTTGGGAACTCCCATTCTTCTCCAGCTAATTCTAACAAAGTTGGTAACAATAATAATGGCGTCAACAATTACAGCAACGTGAAGCCCAAATTTGAGATGGGGTGCGAAGGAAACATGGATTTGCCGACGGTGATGGCTCAATGTTCGTATGAGAATCGGAATGGTTCGCCAAAATATGGTGTGGGAATGAAGAGGAATGTTGGGGCTATGAATCGAAGCCCTTTGCTTGCTCAAGATCATGTCATAGCTGAGAGAAAGCGTAGAGAAAAGCTCAGCCAGCGATTTGTTGCTCTTTCAGCTCTTATTCCAGATCTCAAGAAGATGGACAAAGCCTCTATTCTTGGGGATGCAATAACATATATAAAAGATCTTCAAGAACGTTTGAAGGTGGCCGATGAACAAGCAGCGAAAGCGACAGTGGAATCAGTGGTGTTTGTGAACAGATCCGACGATCTCTCGACCATCGGCGACGATTCATCGGACGAAAACAGCTCGTCGGATGGAGGAATCCCGGACATAGAAGCGAGAGTCTCCGGCAAGGATGTTCTGTTGAGGATTCATGGCAAGAAATGCAAAGGGAGTCTTTCAAATATACTAAAGGAGATAGAGAAGCTTAATCTAACGGTTCTCAACAGCAGTGCCTTGCCATTTGGCAATTTCAGACTTGATATAACTATTATTGCTCAGATGGATGAAGATTTTTGCATGACAGTGAAGGAGCTAGTGCAGAAATTAAGACAGGCTTCTCTTGAATTCGTGTAA | 798 | 43.73 | MAASSSSSHIISFGNSHSSPANSNKVGNNNNGVNNYSNVKPKFEMGCEGNMDLPTVMAQCSYENRNGSPKYGVGMKRNVGAMNRSPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILGDAITYIKDLQERLKVADEQAAKATVESVVFVNRSDDLSTIGDDSSDENSSSDGGIPDIEARVSGKDVLLRIHGKKCKGSLSNILKEIEKLNLTVLNSSALPFGNFRLDITIIAQMDEDFCMTVKELVQKLRQASLEFV | 265 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 73247987 | 73250538 | - | Tan0021307.2 | Tan03g1733 | 747237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g1733 | 265 | MobiDBLite | consensus disorder prediction | 166 | 185 | - | - | |
| Tan03g1733 | 265 | Pfam | Helix-loop-helix DNA-binding domain | 92 | 137 | IPR011598 | GO:0046983(InterPro) | |
| Tan03g1733 | 265 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 92 | 149 | IPR036638 | GO:0046983(InterPro) | |
| Tan03g1733 | 265 | PANTHER | BHLH TRANSCRIPTION FACTOR | 4 | 261 | IPR052610 | - | |
| Tan03g1733 | 265 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Tan03g1733 | 265 | Gene3D | - | 81 | 151 | IPR036638 | GO:0046983(InterPro) | |
| Tan03g1733 | 265 | Coils | Coil | 133 | 153 | - | - | |
| Tan03g1733 | 265 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 87 | 136 | IPR011598 | GO:0046983(InterPro) | |
| Tan03g1733 | 265 | SMART | finulus | 93 | 142 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g1731 | Tan-Chr3:73237058 | Tan03g1733 | Tan-Chr3:73247987 | 1.30E-48 | dispersed | |
| Tan03g1733 | Tan-Chr3:73247987 | Tan07g1978 | Tan-Chr7:71506523 | 1.60E-15 | dispersed | |
| Tan03g1733 | Tan-Chr3:73247987 | Tan03g1735 | Tan-Chr3:73273062 | 4.70E-55 | proximal | |
| Tan03g1732 | Tan-Chr3:73247987 | Tan03g1733 | Tan-Chr3:73247987 | 2.30E-142 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27020 | PF00010 | HLH | 5.00E-12 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g1733 | - | - | - | 0.0 |