Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1755 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATGTTCAAATGGGTTCAATGATTTCTTCCAAAATGGCTGGAATTTCAATTCTTTTGACGAAAATCCCCAAATGGGTTCCTCTATTTTCCCCCATTTTCCCGGTATCCAAACAGCTGCTGATTTTTCTTTCGCCGACCAGCAGCTCTACAGCAATTTCCTCGAAGGGTTTGCAATGTCGGAGCTGGATTCTTCATCCTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCAAGAAGAAATGAGTATTAAGAACAGTGGTTACCCTCCGGCGCCGATGGAGGAGGAAGAACTTGGTTTTATGGATGGTGAAGCGGCTCCAAGTGTCTGCAAAGTGGAAATGGAGCAAATGGGTGGCCGTGAAACTAATGGTTCTAAAATGGGTGTGGCTGAATTGGGGAAAAGAAGCAACAAGGCCAAGAAGATTGAAGGACAACCATCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCAATAGTTCCTAAAATAAGCAAGATGGATAGAACTTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATTGAAAGAATCAATAACTTGAAAGAAGAAGAAGTTGGTTTAGATTCAAATCATGTGAGCTTAAATGGGATCTCAAAGGAAGGGAAGTCCAGTGAAGTTCTAGTAAGAAATTCCCCGAAGTTCGATGTTGAAAGGAAGGAGAGGGAGACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCCACTGTCAACACATTAGAAGCATTGGGCCTTGAGATTCAACAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCAGTGGCAAGTTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGTTATGGAGGAAAGTGCTTGTAG 1017 42.77 MELSQHGFLEELLASTPWTSSCSNGFNDFFQNGWNFNSFDENPQMGSSIFPHFPGIQTAADFSFADQQLYSNFLEGFAMSELDSSSYTKNNETPPFVSQEEMSIKNSGYPPAPMEEEELGFMDGEAAPSVCKVEMEQMGGRETNGSKMGVAELGKRSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEVGLDSNHVSLNGISKEGKSSEVLVRNSPKFDVERKERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKEALFRNAGYGGKCL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73407400 73409126 - Tan0015928.1 Tan03g1755 747259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1755 338 Pfam Helix-loop-helix DNA-binding domain 172 214 IPR011598 GO:0046983(InterPro)
Tan03g1755 338 Coils Coil 211 231 - -
Tan03g1755 338 Pfam Plant bHLH transcription factor, ACT-like domain 257 327 IPR054502 -
Tan03g1755 338 SMART finulus 171 220 IPR011598 GO:0046983(InterPro)
Tan03g1755 338 Gene3D - 166 235 IPR036638 GO:0046983(InterPro)
Tan03g1755 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983(InterPro)
Tan03g1755 338 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 118 333 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan03g1755 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 230 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1755 Tan-Chr3:73407400 Tan05g3011 Tan-Chr5:82028499 7.10E-32 dispersed
Tan03g1755 Tan-Chr3:73407400 Tan03g1756 Tan-Chr3:73407400 9.20E-189 tandem
Tan01g3882 Tan-Chr1:103768169 Tan03g1755 Tan-Chr3:73407400 7.80E-79 wgd
Tan02g2508 Tan-Chr2:93674442 Tan03g1755 Tan-Chr3:73407400 8.50E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27027 PF00010 HLH 2.10E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1755 - - - 0.0