Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1763 ATGGGTCGAGGGAAGATTGTGATTAGAAGGATTGATAATTCAGCGAGCAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATTAAAAAGGCTAAAGAGCTCGCAATTCTCTGTGATGCAGAACTTGGACTCATCATTTTTTCCAGCTCTGGCAAACTCTATGATTTTGCAAGCACTAGCATAGAGTCAGTAATTGAGAAATATAACAGACGGAAGGAAGAAGATGAACTGCTGTTGAATCCAGCTTCGGATGTCAAGTTATGGCAGAAAGAAGTAGCAACTCTGAGGCAACAACTACTTAACTTGCAAGAGAATAATCGGAAATTAATGGGAGAGCAACTCTATGGTTTATCAATCAAAGACCTAAATAATCTTGAGAGTCAATTGGAGTTCAGTTTACAAAGTATCAGAATTAAAAAGGAACAGATATTAAATGATGAAATAAAAGAATTGAACAGAAAGGGAATTCTGATTCATCAAGAAAATATAGAGCTGAGCAAGAAAGTAAACCTTTTTTGTCAAGAAAACATGGAATTACGCAGAAAGGTTTATGGGCATGACTCGAGATCAGAGATGAACATAGCCACCGGAAACGCCTTGATTCCTTATGGTATTATCACCGCCGGCGGCGGCCCGGCTGCAAGCGACACCCTGCGTATGCCTATTCATCTTCAGCTCAGTCCGCCGGAGCAACAAACTTAA 705 40.28 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELAILCDAELGLIIFSSSGKLYDFASTSIESVIEKYNRRKEEDELLLNPASDVKLWQKEVATLRQQLLNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQILNDEIKELNRKGILIHQENIELSKKVNLFCQENMELRRKVYGHDSRSEMNIATGNALIPYGIITAGGGPAASDTLRMPIHLQLSPPEQQT 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73460082 73463171 - Tan0018710.1 Tan03g1763 747267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1763 234 Coils Coil 123 143 - -
Tan03g1763 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan03g1763 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan03g1763 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 Coils Coil 86 113 - -
Tan03g1763 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan03g1763 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 Gene3D - 13 109 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1763 234 Pfam K-box region 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan03g1763 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1763 Tan-Chr3:73460082 Tan03g2620 Tan-Chr3:79270654 1.20E-35 dispersed
Tan03g2679 Tan-Chr3:79767077 Tan03g1763 Tan-Chr3:73460082 1.80E-13 dispersed
Tan01g3872 Tan-Chr1:103600486 Tan03g1763 Tan-Chr3:73460082 1.40E-57 wgd
Tan02g2482 Tan-Chr2:93361392 Tan03g1763 Tan-Chr3:73460082 3.50E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27029 PF01486 K-box 3.80E-23 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1763 K09264 - csv:101206453 390.578