Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1764 ATGGAGAGGAAAGGGGAAAGAAGAAGCTATCGGCCATGGATTTGGAAGCTTGAGTTCTCAGCAATGGCGGTCCTTTTCTTTTTCTTCAGTTTAACGCTCGCCAAAGCACAACAACAACAAGATTCGACCCAACAAATACTAAGGAATTTGGTGGAGAACAACAGATCAATGTTGTCATCAGACGTAAGACTAGAAACGAATAATCATCAACAGGTGGTAATGGACAATGGCTTAGTTCGAGTAACTTTGTCTCGTCCAGATGGCAATGTTATTGGCATAAAATACAATAACATGAATAACGTACTCGATTCTCGTAATGCATACCATAAAAGAGGATACTGGGACCTTGTTTGGAACCGCCCAAATGAACGTAGTGTCCTTGACGGATTAAGTGCAACCCATTTCAAGGTGATTACAGCCACGAGTGACAAAATAGAGCTTTCATTCACTAGAAATTGGGATTCTTCAGATACTTCGTCAATCCCTTTGAACATAGACAAGAGGTTTATTCTGCGGCGCGGCGATTCTGGGTTCTATACATATGGCATATTTGAACGGTTGGATGGATGGCCTCAAATTGAGGTGGATGAGATCAGAACCGTCTACAAAGTCCAAAGAGAAAAATTTTATTACATGGCGGTATCGGACGACAGACAGAGGATCATGCCAACGCAACAGGATCGGGACACCGGGGAGCCTCTCGCTTATCCGGAGGCGGTTCTCTTAACCCGACCCATCAACCCGAACCTAAAAGGAGAGGTGGACGATAAGTACCAGTACTCGAAAGAGAATATGGAGAACCGGGTTCATGGATGGGTATCTAGGGACCCACACGTGGGGTTTTGGATGATCACACCCAGTGATGAGTTTCGTGCGGCGGGGCCCGTCAAGCAGGAACTCACTTCCCACGTTGGCCCCACTACTCTCTCCGTATTCATGAGTGATCATTATGCGGGTAAAGATGTTTCGTTGAGATTTGGAGAGGGAGAGGCATGGAAGAAGGTTTTGGGACCGGTGTTTGTTTATCTCAACTCGGATCCGACCGGCACTGAAAGTCCCGGTTCATTATGGGAAGATGCTAAAAACCAGATGAGGATCGAAACGAGGAAGTGGCCATACAGCTTTGTTGAGTCCAAAGATTTTCCATCCTCAGACGAAAGAGGTACCGTGACTGGTCAATTGCTAGTCCGAGACAGATACGCCGAGAAGTCGCTGATGTCGGCCGATTCTGCCTTCGTAGGCCTTGCAGCTCCCGGGGAATTGGGGTCTTGGCAAAGAGACAGCAAGGGATATCAATTCTGGACACGAGCGGACCGCCATGGATATTTCTCAATTCAAAACATAAGGCCAGGAAACTACAATCTCTACGCATGGGTACCGGGCGTAATCGGCGATTACAAATACGACGGCGACATCACCGTCACGCCGGCGAGTTCCACCAACCTAAGCATGCTGATCTACGACCCTCCAAGACGAGGCCCAACTCTGTGGGAGATCGGCGTTCCAGACCGGAAGGCGGCCGAGTTCTATATACCAGATCCCGAACCCACCCGCATGAACCGTTTGTTTAACAACACCAAAATTCAAACCCCAGATAGGTTCCGACAGTACGGTCTGTGGGAACGCTACGCCGATTTGTACCCTGTTCAGGATTTAATCTACAACGTCGGCACCGACGACTACCGCCGCCACTGGTTCTACGCTCACGTGACAAGAGCCACCGGAAACGGGGAGTACCAGGCAACCACGTGGCAGATTGTGTTTCGCCTTCCAGGGCCTAAACAAACCGGAACCTATACGCTCCGGTTGGCATTGGCCGCTTCTACCCAGGCGGTGGTCGACATCCGGTTCAACGACCCGTCGTCCAGACGGCCTCATTTGACGACCGGGTATGTTGCCGCAGGAAGAGATAACGCTATTGCAAGACATGGCATTCATGGGCTTTATCGGTTATTCAACTTCGACGTTCCCAGTTATTATTTGATTGGAGATGAAGACAACGTAATCTATCTAACACAGAGAAGACATATAGGGCCTTTCCAAGGAGTAATGTACGATTACATACGATTTGAAGGTGTAGAGTAA 2085 48.68 MERKGERRSYRPWIWKLEFSAMAVLFFFFSLTLAKAQQQQDSTQQILRNLVENNRSMLSSDVRLETNNHQQVVMDNGLVRVTLSRPDGNVIGIKYNNMNNVLDSRNAYHKRGYWDLVWNRPNERSVLDGLSATHFKVITATSDKIELSFTRNWDSSDTSSIPLNIDKRFILRRGDSGFYTYGIFERLDGWPQIEVDEIRTVYKVQREKFYYMAVSDDRQRIMPTQQDRDTGEPLAYPEAVLLTRPINPNLKGEVDDKYQYSKENMENRVHGWVSRDPHVGFWMITPSDEFRAAGPVKQELTSHVGPTTLSVFMSDHYAGKDVSLRFGEGEAWKKVLGPVFVYLNSDPTGTESPGSLWEDAKNQMRIETRKWPYSFVESKDFPSSDERGTVTGQLLVRDRYAEKSLMSADSAFVGLAAPGELGSWQRDSKGYQFWTRADRHGYFSIQNIRPGNYNLYAWVPGVIGDYKYDGDITVTPASSTNLSMLIYDPPRRGPTLWEIGVPDRKAAEFYIPDPEPTRMNRLFNNTKIQTPDRFRQYGLWERYADLYPVQDLIYNVGTDDYRRHWFYAHVTRATGNGEYQATTWQIVFRLPGPKQTGTYTLRLALAASTQAVVDIRFNDPSSRRPHLTTGYVAAGRDNAIARHGIHGLYRLFNFDVPSYYLIGDEDNVIYLTQRRHIGPFQGVMYDYIRFEGVE 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73473345 73477815 + Tan0019950.1 Tan03g1764 747268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1764 694 SUPERFAMILY Galactose mutarotase-like 66 348 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Tan03g1764 694 SUPERFAMILY Starch-binding domain-like 429 484 IPR013784 GO:0030246(InterPro)
Tan03g1764 694 FunFam Rhamnogalacturonate lyase B 383 482 - -
Tan03g1764 694 Pfam Rhamnogalacturonate lyase family 67 254 IPR010325 -
Tan03g1764 694 Gene3D - 383 484 - -
Tan03g1764 694 Pfam Polysaccharide lyase family 4, domain III 495 690 IPR029411 -
Tan03g1764 694 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 692 IPR051850 -
Tan03g1764 694 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Tan03g1764 694 CDD RGL4_C 497 691 - -
Tan03g1764 694 SUPERFAMILY Galactose-binding domain-like 493 691 IPR008979 -
Tan03g1764 694 Coils Coil 33 53 - -
Tan03g1764 694 CDD RGL4_M 386 482 IPR029413 -
Tan03g1764 694 CDD RGL4_N 66 348 - -
Tan03g1764 694 Gene3D - 493 690 - -
Tan03g1764 694 Gene3D - 64 353 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2451 Tan-Chr2:93136837 Tan03g1764 Tan-Chr3:73473345 1.40E-214 dispersed
Tan03g1764 Tan-Chr3:73473345 Tan03g2300 Tan-Chr3:77147054 7.20E-156 dispersed
Tan01g3867 Tan-Chr1:103533285 Tan03g1764 Tan-Chr3:73473345 1.10E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1764 K18195 - csv:101206696 1016.14