Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1792 ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTTACCTTCTCCAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCTGTTCTATGCGATGCCGATGTCGCCCTCATCATCTTCTCCACCACCGGAAAGCTGTTTGAGTACTCCAGCTCTAGCATGAAGGGAATTATAGAAAGACATAATTTGCATTCTAAGAACCTTCAGAAATTGGAACAACCATCACTTGAACTACAGCTGGTTGAAAACAGCAATTACACCCGATTGAACAAGGAAATAGCAGAGAAAACCCATCAGCTAAGGCAGATGAGGGGAGAGGAGCTCCAAACGTTGAATATAGAGGAACTGCAGCAGCTGGAAAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGCGAAAGGATCATGAAAGAGATAACTGATCTTCAAAGAAAGTCGGCCGAGTTGATGGAAGAGAACAAGCGACTGAAACAACAAGCGGAGAAGATGAATGGCGTGAGGCACATCGGTGTAGAGCCCGAGATTTTGGTTGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAACTCCAATGGCCCGCCCCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGACTGCCGTATTCCGGGTAA 687 47.89 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMEENKRLKQQAEKMNGVRHIGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGLPYSG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73623664 73629071 - Tan0007634.1 Tan03g1792 747296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1792 228 Coils Coil 94 114 - -
Tan03g1792 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan03g1792 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan03g1792 228 MobiDBLite consensus disorder prediction 191 228 - -
Tan03g1792 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 Coils Coil 143 177 - -
Tan03g1792 228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 Coils Coil 121 141 - -
Tan03g1792 228 FunFam Transcription factor, MADS-box 13 83 - -
Tan03g1792 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1792 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan03g1792 228 Pfam K-box region 91 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0547 Tan-Chr1:5157779 Tan03g1792 Tan-Chr3:73623664 9.50E-46 dispersed
Tan02g1170 Tan-Chr2:25520998 Tan03g1792 Tan-Chr3:73623664 1.60E-40 dispersed
Tan02g1171 Tan-Chr2:25538004 Tan03g1792 Tan-Chr3:73623664 3.40E-16 dispersed
Tan03g1792 Tan-Chr3:73623664 Tan03g1794 Tan-Chr3:73623664 5.70E-118 dispersed
Tan03g1792 Tan-Chr3:73623664 Tan03g1793 Tan-Chr3:73623664 2.00E-115 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27031 PF01486 K-box 2.40E-16 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1792 - - - 0.0