Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g1796 | ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTTACCTTCTCCAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCTGTTCTATGCGATGCCGATGTCGCCCTCATCATCTTCTCCACCACCGGAAAGCTGTTTGAGTACTCCAGCTCTAGCATGAAGGGAATTATAGAAAGACATAATTTGCATTCTAAGAACCTTCAGAAATTGGAACAACCATCACTTGAACTACAGCTGGTTGAAAACAGCAATTACACCCGATTGAACAAGGAAATAGCAGAGAAAACCCATCAGCTAAGGCAGATGAGGGGAGAGGAGCTCCAAACGTTGAATATAGAGGAACTGCAGCAGCTGGAAAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGCGAAAGGATCATGAAAGAGATAACTGATCTTCAAAGAAAGTCGGCCGAGTTGATGGAAGAGAACAAGCGACTGAAACAACAAGTAAGAAGAACCCTCTCCGCAGCATTTATAAATTGTGTTCTTTAA | 555 | 45.05 | MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMEENKRLKQQVRRTLSAAFINCVL | 184 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 73623664 | 73629071 | - | Tan0007634.5 | Tan03g1796 | 747300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g1796 | 184 | Coils | Coil | 94 | 114 | - | - | |
| Tan03g1796 | 184 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Tan03g1796 | 184 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 171 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Tan03g1796 | 184 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
| Tan03g1796 | 184 | Coils | Coil | 143 | 177 | - | - | |
| Tan03g1796 | 184 | SUPERFAMILY | SRF-like | 3 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | Coils | Coil | 121 | 141 | - | - | |
| Tan03g1796 | 184 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan03g1796 | 184 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Tan03g1796 | 184 | Pfam | K-box region | 91 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g1794 | Tan-Chr3:73623664 | Tan03g1796 | Tan-Chr3:73623664 | 7.00E-84 | dispersed | |
| Tan03g1796 | Tan-Chr3:73623664 | Tan06g2138 | Tan-Chr6:70836650 | 8.10E-30 | dispersed | |
| Tan03g1795 | Tan-Chr3:73623664 | Tan03g1796 | Tan-Chr3:73623664 | 3.10E-82 | tandem | |
| Tan03g1796 | Tan-Chr3:73623664 | Tan03g1797 | Tan-Chr3:73623664 | 4.30E-92 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27035 | PF01486 | K-box | 8.70E-17 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g1796 | - | - | - | 0.0 |