Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1796 ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTTACCTTCTCCAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCTGTTCTATGCGATGCCGATGTCGCCCTCATCATCTTCTCCACCACCGGAAAGCTGTTTGAGTACTCCAGCTCTAGCATGAAGGGAATTATAGAAAGACATAATTTGCATTCTAAGAACCTTCAGAAATTGGAACAACCATCACTTGAACTACAGCTGGTTGAAAACAGCAATTACACCCGATTGAACAAGGAAATAGCAGAGAAAACCCATCAGCTAAGGCAGATGAGGGGAGAGGAGCTCCAAACGTTGAATATAGAGGAACTGCAGCAGCTGGAAAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGCGAAAGGATCATGAAAGAGATAACTGATCTTCAAAGAAAGTCGGCCGAGTTGATGGAAGAGAACAAGCGACTGAAACAACAAGTAAGAAGAACCCTCTCCGCAGCATTTATAAATTGTGTTCTTTAA 555 45.05 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMEENKRLKQQVRRTLSAAFINCVL 184
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 73623664 73629071 - Tan0007634.5 Tan03g1796 747300
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1796 184 Coils Coil 94 114 - -
Tan03g1796 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan03g1796 184 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 171 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan03g1796 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 FunFam Transcription factor, MADS-box 13 83 - -
Tan03g1796 184 Coils Coil 143 177 - -
Tan03g1796 184 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 Coils Coil 121 141 - -
Tan03g1796 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g1796 184 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan03g1796 184 Pfam K-box region 91 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1794 Tan-Chr3:73623664 Tan03g1796 Tan-Chr3:73623664 7.00E-84 dispersed
Tan03g1796 Tan-Chr3:73623664 Tan06g2138 Tan-Chr6:70836650 8.10E-30 dispersed
Tan03g1795 Tan-Chr3:73623664 Tan03g1796 Tan-Chr3:73623664 3.10E-82 tandem
Tan03g1796 Tan-Chr3:73623664 Tan03g1797 Tan-Chr3:73623664 4.30E-92 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27035 PF01486 K-box 8.70E-17 No_clan Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1796 - - - 0.0