Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g1812 | ATGGCGGATAGTTTTTACTGTACAGAGAGCGCCAATACTTGTTTTGATGACTTTCATTGTAATGCTACAAATAATGAGTTTGAGCGATGCTCAATTTCTCTGCCCCACCGAAGAATCCGAGACCCGAATGTTGACTGTTTCGGATCCGGGAATTTGTTGAGTGAAGAGAGGATTAGGGGAATGGTTGAGAAGGAGATTGAGCATTTGCCTAGACATGATTATCTTAAGAGAATGCGCTGTGGGGATTTGGATTTGAAGTTTAGGAGAGAGGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTCTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCACATGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTAGCTTGTATGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCACTGTTGAGCAGCCCGTACCGAGCCAATCCTTGTTAAAATCTGCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAGCCCTCTGAAGTTGCTTTGGCTGTGGCAATTTCCATTTCCGGAGAATTTCAAGCACCAGACATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAAAGTCATGAAGTGTATTGAACTGATCAGAGATTTTTCATTGATTAATAATGTTTATGGAAATGCATTGGTTGGTGGTAATGTTGGTGGCAGTTCAGTTCCTCAGAGTCCTGTTGGAGTGTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTAACTGCAGGTGCATGTGGTAATCCTTCTTCTTCTTCTCATGACAGTCCAGACAGCAAGAGAAGGAGACAAGACAGACCATCAAAAGATGATTCAAGTCCATCCAGTCCTGTCAAATGA | 1080 | 41.48 | MADSFYCTESANTCFDDFHCNATNNEFERCSISLPHRRIRDPNVDCFGSGNLLSEERIRGMVEKEIEHLPRHDYLKRMRCGDLDLKFRREAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHMPMDKSWTVQLLSVACMSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQPVPSQSLLKSAQLILSTIKGIDFLEFKPSEVALAVAISISGEFQAPDMNKAILSFPYMEKEKVMKCIELIRDFSLINNVYGNALVGGNVGGSSVPQSPVGVLDAACLSYKTEELTAGACGNPSSSSHDSPDSKRRRQDRPSKDDSSPSSPVK | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 73728676 | 73730511 | + | Tan0018868.1 | Tan03g1812 | 747316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g1812 | 359 | SUPERFAMILY | Cyclin-like | 53 | 187 | IPR036915 | - | |
Tan03g1812 | 359 | Gene3D | - | 61 | 276 | - | - | |
Tan03g1812 | 359 | Gene3D | - | 71 | 188 | - | - | |
Tan03g1812 | 359 | ProSitePatterns | Cyclins signature. | 88 | 119 | IPR048258 | - | |
Tan03g1812 | 359 | Pfam | Cyclin, N-terminal domain | 60 | 187 | IPR006671 | - | |
Tan03g1812 | 359 | MobiDBLite | consensus disorder prediction | 322 | 359 | - | - | |
Tan03g1812 | 359 | Pfam | Cyclin, C-terminal domain | 190 | 281 | IPR004367 | - | |
Tan03g1812 | 359 | PANTHER | CYCLINS | 61 | 247 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Tan03g1812 | 359 | SMART | cyclin_7 | 93 | 181 | IPR013763 | - | |
Tan03g1812 | 359 | CDD | CYCLIN_AtCycD-like_rpt1 | 88 | 185 | - | - | |
Tan03g1812 | 359 | MobiDBLite | consensus disorder prediction | 335 | 352 | - | - | |
Tan03g1812 | 359 | FunFam | D2/4-type cyclin | 71 | 183 | - | - | |
Tan03g1812 | 359 | FunFam | D6-type cyclin | 184 | 275 | - | - | |
Tan03g1812 | 359 | CDD | CYCLIN_AtCycD-like_rpt2 | 190 | 277 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1592 | Tan-Chr3:72157629 | Tan03g1812 | Tan-Chr3:73728676 | 1.00E-33 | dispersed | |
Tan03g1812 | Tan-Chr3:73728676 | Tan04g1185 | Tan-Chr4:11087699 | 9.80E-40 | dispersed | |
Tan01g0618 | Tan-Chr1:5726517 | Tan03g1812 | Tan-Chr3:73728676 | 9.10E-51 | transposed | |
Tan02g2449 | Tan-Chr2:93112921 | Tan03g1812 | Tan-Chr3:73728676 | 3.20E-83 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g1812 | K18810 | - | csv:101209378 | 548.125 |