Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1812 ATGGCGGATAGTTTTTACTGTACAGAGAGCGCCAATACTTGTTTTGATGACTTTCATTGTAATGCTACAAATAATGAGTTTGAGCGATGCTCAATTTCTCTGCCCCACCGAAGAATCCGAGACCCGAATGTTGACTGTTTCGGATCCGGGAATTTGTTGAGTGAAGAGAGGATTAGGGGAATGGTTGAGAAGGAGATTGAGCATTTGCCTAGACATGATTATCTTAAGAGAATGCGCTGTGGGGATTTGGATTTGAAGTTTAGGAGAGAGGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTCTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCACATGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTAGCTTGTATGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCACTGTTGAGCAGCCCGTACCGAGCCAATCCTTGTTAAAATCTGCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAGCCCTCTGAAGTTGCTTTGGCTGTGGCAATTTCCATTTCCGGAGAATTTCAAGCACCAGACATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAAAGTCATGAAGTGTATTGAACTGATCAGAGATTTTTCATTGATTAATAATGTTTATGGAAATGCATTGGTTGGTGGTAATGTTGGTGGCAGTTCAGTTCCTCAGAGTCCTGTTGGAGTGTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTAACTGCAGGTGCATGTGGTAATCCTTCTTCTTCTTCTCATGACAGTCCAGACAGCAAGAGAAGGAGACAAGACAGACCATCAAAAGATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1080 41.48 MADSFYCTESANTCFDDFHCNATNNEFERCSISLPHRRIRDPNVDCFGSGNLLSEERIRGMVEKEIEHLPRHDYLKRMRCGDLDLKFRREAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHMPMDKSWTVQLLSVACMSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQPVPSQSLLKSAQLILSTIKGIDFLEFKPSEVALAVAISISGEFQAPDMNKAILSFPYMEKEKVMKCIELIRDFSLINNVYGNALVGGNVGGSSVPQSPVGVLDAACLSYKTEELTAGACGNPSSSSHDSPDSKRRRQDRPSKDDSSPSSPVK 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73728676 73730511 + Tan0018868.1 Tan03g1812 747316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1812 359 SUPERFAMILY Cyclin-like 53 187 IPR036915 -
Tan03g1812 359 Gene3D - 61 276 - -
Tan03g1812 359 Gene3D - 71 188 - -
Tan03g1812 359 ProSitePatterns Cyclins signature. 88 119 IPR048258 -
Tan03g1812 359 Pfam Cyclin, N-terminal domain 60 187 IPR006671 -
Tan03g1812 359 MobiDBLite consensus disorder prediction 322 359 - -
Tan03g1812 359 Pfam Cyclin, C-terminal domain 190 281 IPR004367 -
Tan03g1812 359 PANTHER CYCLINS 61 247 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan03g1812 359 SMART cyclin_7 93 181 IPR013763 -
Tan03g1812 359 CDD CYCLIN_AtCycD-like_rpt1 88 185 - -
Tan03g1812 359 MobiDBLite consensus disorder prediction 335 352 - -
Tan03g1812 359 FunFam D2/4-type cyclin 71 183 - -
Tan03g1812 359 FunFam D6-type cyclin 184 275 - -
Tan03g1812 359 CDD CYCLIN_AtCycD-like_rpt2 190 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1592 Tan-Chr3:72157629 Tan03g1812 Tan-Chr3:73728676 1.00E-33 dispersed
Tan03g1812 Tan-Chr3:73728676 Tan04g1185 Tan-Chr4:11087699 9.80E-40 dispersed
Tan01g0618 Tan-Chr1:5726517 Tan03g1812 Tan-Chr3:73728676 9.10E-51 transposed
Tan02g2449 Tan-Chr2:93112921 Tan03g1812 Tan-Chr3:73728676 3.20E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1812 K18810 - csv:101209378 548.125