Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1851 ATGAATCCTCCCACTTTCCCAATGGAATTCTCCGGCGATCCACTTCCGACAACTCTCATCGGAAACGGCGACCCGCGGATTCCGTTGCATAACCTCTCTACGATTCGTTCCAGAATGGATGCCGTCCAAATCTTCCTATCCGATAACGTCGACAGGGAAATTCGCATCAGCAATCAGCAGATGGATGCGGTTTCGTCTGAAATCGCCACCGCAATCCAACAGATCATAGTCAACGGCGCCGCTCTTCTAGCCTGCGCCCAAGTGAAAAACCCGAATACGCCAGATTTGACTGCCTCGATGACTCGCACTCATCCGATTCCTGTAGCAGAGAAATCAAGGGCGGAGATGAAGGTGGAGGCTGTAGATGAGATTACGATTACGAGAACCGAATCCGAGGAATTTGACCCGGATTGTGAAATAGTGGAGCTGGACGCGATGGAATTGCTAGCGGAGCACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGCGATGCGAATTTGCGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACCCCAGAGGCGTTGGCGAAGCCGTTGGATTTGGTTGCGGCGGAGCACAGGGCGAAGCGCACGCGGTTTTCGTGCCCTTACGACGGTTGTGTAAGGAACAAAACGCACAAGAAGTTTAGGCCGTTGAAATCGTTGATTTGCGTAAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGGTGCAACAAGAAGAGCTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCGAAGTGGCGGTGTTCGTGTGGGACGACCTTTTCCCGTAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCGGTGGCGGATGACGACGATGGGAAAGGGAAATCCACGGCGGCCACGCCGGAGATGGATGAAGATGGGGACTTCAATCGGATTTCAAAGGATGTTAATTTCCCAAATGCCTCGAATGGTTCGGATGATGGATCTTTCGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAAGAGGTGCTGGGATTCCCCTACAGTCTCGATTCGGAATCGGAATGGAATTTTTGTGGTTTTTGA 1137 51.36 MNPPTFPMEFSGDPLPTTLIGNGDPRIPLHNLSTIRSRMDAVQIFLSDNVDREIRISNQQMDAVSSEIATAIQQIIVNGAALLACAQVKNPNTPDLTASMTRTHPIPVAEKSRAEMKVEAVDEITITRTESEEFDPDCEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDLVAAEHRAKRTRFSCPYDGCVRNKTHKKFRPLKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVADDDDGKGKSTAATPEMDEDGDFNRISKDVNFPNASNGSDDGSFESFLDGFGSIENHCLQEVLGFPYSLDSESEWNFCGF 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73998951 74000883 - Tan0020880.1 Tan03g1851 747355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1851 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Tan03g1851 378 Gene3D Classic Zinc Finger 154 177 - -
Tan03g1851 378 SMART c2h2final6 270 294 IPR013087 -
Tan03g1851 378 SMART c2h2final6 242 264 IPR013087 -
Tan03g1851 378 SMART c2h2final6 204 237 IPR013087 -
Tan03g1851 378 SMART c2h2final6 154 176 IPR013087 -
Tan03g1851 378 SUPERFAMILY beta-beta-alpha zinc fingers 151 177 IPR036236 -
Tan03g1851 378 Gene3D Classic Zinc Finger 231 299 - -
Tan03g1851 378 Pfam Zinc finger, C2H2 type 154 176 IPR013087 -
Tan03g1851 378 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 320 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Tan03g1851 378 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Tan03g1851 378 FunFam Zinc finger 45-like 151 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3006 Tan-Chr1:74073248 Tan03g1851 Tan-Chr3:73998951 1.50E-65 dispersed
Tan03g1851 Tan-Chr3:73998951 Tan08g1171 Tan-Chr8:26497439 2.20E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27042 PF00096 zf-C2H2 0.00016 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1851 - - - 0.0