Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1920 ATGGCGGGTCAACCGTCAGATTCTTCTCCTCTTATTCCACCGGCGCCGATCACCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCGAAGTATGTTCATCGAGAATGTCTGGATCATTGGCGAGCTGTGAAGGAAGGGTTTGCTTTTGCTCATTGTACCACCTGTAAGGCCCCTTATCATTTGAGAGTGCATGCTGTCGCAGATAGAAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGATGTATTTTATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTCGATAACAAAATTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCGTTGCTCGGGTTATCTGGGTGCTTCATCACTTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGCTGCCATCCTGGACTATGTGCAGACTGTCATTTACCTGGTACTCTTTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACCGAATGTGGATGTCTAGGAGGTGCTGGCGAAGCAGGACTGCCATTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCCACCATGGTTGGACAACGAATATGGCAACGGCACTACCACATACTTGCAAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGAGAGATGACAGGATCTGACTGGCTACCTCCACCACTTCCGACAGAGCACGTTCAACAGCTAAAAACTCTTGGCCTTCTATGA 972 43.72 MAGQPSDSSPLIPPAPITDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLMYFIDGCQHYWLRLTWGFDNKISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPTEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74407141 74412125 - Tan0020865.1 Tan03g1920 747424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1920 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Tan03g1920 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Tan03g1920 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
Tan03g1920 323 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
Tan03g1920 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
Tan03g1920 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 322 - -
Tan03g1920 323 SUPERFAMILY RING/U-box 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1920 Tan-Chr3:74407141 Tan09g1394 Tan-Chr9:66071587 2.30E-56 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1920 - - - 0.0