Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1950 ATGACGGGTAGAGGATCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGGCGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTCTGTAATGAAGCTGGTTGGATGGTTGAAGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGTACTTGTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCGAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTTCAAGCCCAACTCGATTTGACGGGAATCCATCTTCTTATCTTCTGCCATTCCTTCAAAACATAACCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTTACTCCACCTCTTTCTTCCCCGACGTCAAGGGGTTCAAAGCGAAAGCCTGACTGGGAGTCCATTCCGAATAGCTACATGACATCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGTCACCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACGGTGGACTCTGGCTGCTGCGTCAGCTTCCAGACCATGGCGCCTTCTGTGGCTCCTCCTTCTCCTACTTTTAATTTGATGAAACCAGTGAGTCAGCAGAAATCCCTCCAGGATTCAGTTGACAGACACGGAGCAATGGGCTGGGGTGCTGCATCTGATAGAGGTCGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCAAAGTGACACCATGGGAGGGTGAGAGAATTCATGAAGTTGGGATGGATGATTTAGAGCTTACACTTGGGAATGGGAAGGCTCGTGGTTAA 960 49.48 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWMVEEDGTTYRKGCKPPPIDIGTCANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFSSPTRFDGNPSSYLLPFLQNITSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYMTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGCCVSFQTMAPSVAPPSPTFNLMKPVSQQKSLQDSVDRHGAMGWGAASDRGRGSEFEFEKFESGKVTPWEGERIHEVGMDDLELTLGNGKARG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74643878 74646926 + Tan0002851.1 Tan03g1950 747454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1950 319 MobiDBLite consensus disorder prediction 156 178 - -
Tan03g1950 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Tan03g1950 319 MobiDBLite consensus disorder prediction 10 24 - -
Tan03g1950 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 318 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Tan03g1950 319 MobiDBLite consensus disorder prediction 156 171 - -
Tan03g1950 319 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1950 K14503 - - csv:101216171 542.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1938 Tan-Chr2:87961930 Tan03g1950 Tan-Chr3:74643878 1.60E-86 dispersed
Tan03g1950 Tan-Chr3:74643878 Tan05g2533 Tan-Chr5:76686586 1.50E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1938 . 1 310 BZR Transcription Factor Family AT1G75080 60.0 4.1e-88 322.4
Tan03g1950 . 28 319 BZR Transcription Factor Family AT1G75080 60.5 1.7e-78 290.4
Tan02g1938 . 1 311 BZR Transcription Factor Family AT1G19350 59.7 1.3e-86 317.4
Tan03g1950 . 28 317 BZR Transcription Factor Family AT1G19350 60.8 6.1e-76 282.0
Tan03g1950 . 6 319 BZR Transcription Factor Family AT3G50750 56.6 2.2e-71 266.5
Tan02g1938 . 1 310 BZR Transcription Factor Family AT3G50750 52.7 2.9e-63 239.6
Tan01g0910 . 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.2e-50 197.2
Tan05g2533 . 80 328 BZR Transcription Factor Family AT4G18890 52.4 4.7e-50 195.3
Tan05g2534 . 1 247 BZR Transcription Factor Family AT4G18890 52.4 4.0e-49 192.2
Tan01g0910 . 1 326 BZR Transcription Factor Family AT1G78700 73.7 3.1e-117 419.1
Tan05g2533 . 1 328 BZR Transcription Factor Family AT1G78700 69.0 1.0e-104 377.5
Tan05g2534 . 2 247 BZR Transcription Factor Family AT1G78700 62.7 9.2e-61 231.5
Tan03g1950 . 28 200 BZR Transcription Factor Family AT4G36780 75.7 9.1e-59 224.6
Tan02g1938 . 33 204 BZR Transcription Factor Family AT4G36780 61.0 1.2e-42 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27045 PF05687 BES1_N 4.80E-63 No_clan Tan TF