Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1958 ATGGACGCTGTCAATCTCCAACCCGACGACGACAATACGATACTCATCTCACAGCTCTACAACCCCGAAATTTACACCCAATTACTCCCTCAACAAGGTGTGTCGGAGGGGAATAAGCCGACGAAGCGGCGGCGGAGGAGGAGCAAAGCGAAGGAGGCGGCCGGGGCGGCGGGGTTGAAGAAGAGGAAGTTGAGTACGGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAACGAGCATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCCCGGCAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCATTCTCAAAAAAGCTCATGATTCTGTTATTCTCCAAAAATCCCACCTTGAATCTGAGATGGTGAAACTCAAAGAGCAATTGACACAAGCGAAAAATGAGATACAACAATTGGTAGAACGAAGCGAGAGGATTTCGAGTAATAGCCCGACCTCATCGGTGACGATGGACGCAGCGCAACCGCCGCCGTCTTTGGGAGAGCTATTTTTGGAAGAATATGAAGATGTATTTTATTGCATGCAAGAGAACAATTATAATCAAGGAATGGAGTGGCTTAATCTTTATATGTAG 654 47.55 MDAVNLQPDDDNTILISQLYNPEIYTQLLPQQGVSEGNKPTKRRRRRSKAKEAAGAAGLKKRKLSTEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKAHDSVILQKSHLESEMVKLKEQLTQAKNEIQQLVERSERISSNSPTSSVTMDAAQPPPSLGELFLEEYEDVFYCMQENNYNQGMEWLNLYM 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74705302 74707112 + Tan0006560.1 Tan03g1958 747462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1958 217 SUPERFAMILY Homeodomain-like 60 124 IPR009057 -
Tan03g1958 217 Gene3D - 54 123 - -
Tan03g1958 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 169 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Tan03g1958 217 CDD homeodomain 60 116 IPR001356 GO:0003677(InterPro)
Tan03g1958 217 Coils Coil 107 127 - -
Tan03g1958 217 SMART HOX_1 58 119 IPR001356 GO:0003677(InterPro)
Tan03g1958 217 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677(InterPro)
Tan03g1958 217 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677(InterPro)
Tan03g1958 217 Coils Coil 135 169 - -
Tan03g1958 217 MobiDBLite consensus disorder prediction 162 181 - -
Tan03g1958 217 MobiDBLite consensus disorder prediction 30 59 - -
Tan03g1958 217 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan03g1958 217 FunFam homeobox-leucine zipper protein ATHB-40 54 123 - -
Tan03g1958 217 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677(InterPro)
Tan03g1958 217 Pfam Homeodomain 61 114 IPR001356 GO:0003677(InterPro)
Tan03g1958 217 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1286 Tan-Chr1:12640020 Tan03g1958 Tan-Chr3:74705302 4.00E-49 dispersed
Tan03g1958 Tan-Chr3:74705302 Tan05g2079 Tan-Chr5:71222985 1.70E-18 dispersed
Tan03g1958 Tan-Chr3:74705302 Tan08g1793 Tan-Chr8:69929903 2.00E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27046 PF00046 Homeodomain 9.00E-17 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1958 K09338 - csv:101216890 321.242