Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1959 ATGGCGGGCCGTTCCGATGAAGAACACTCTTGCTCTAACTCCAACTCCTTCAAGACAATTGCTAGTGCTTTCAGTCGGTTCATTGGGGACGATGATTCTGAAGATTTGGGTGCCGAGTTCGTCTTCAATATCGAACCTAGTTTGCTTATTGACCCTTGTTGTTTAAAGATTGGTGAAGTTATTGGCGAAGGTTCATGCTCCATTGTGTATGAAGGACTGTACGATAATCAGCTTGTTGCCGTGAAGATTATACAGCCAAGCAGAACATCAGCTATAAGTGCTGAAAAGAAGGAGAGATTTCAGAGAGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGCGCTTCCATAGAGCCGACATTGATGATAATCACTGAGCTCATGAGAGGTGGAACACTTCAGAAGTACTTGTGGAGCATCCGGCCAGAGACCCCAGATCTGAAGCTTTCCTTAAGTTTTGCTCTAGATCTATCACAAGTTATGGCATACTTACATACAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTTACAGAAGACAAGCAACGGGTTAAACTGGCAGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCGGGTACTTACCGTTGGATGGCCCCCGAGCTATTTAGCATTGATCCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTGTACAGCTTCTCGATAATTCTTTGGGAATTGATGACAAACAAGACTCCATTCAAGGGCAGAAATAATGTAATGGTGGCATATGCCACAGCCAAGAACGTAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGGAGTCATGCTGGGCTGAGGATCCAAACATCCGTCCAGAATTTACAGTAGTCATAGATTCTCTAACCAATCTTCTTCAAACTTTTGCCTTAAAAGAATCTTCACTTCCTAACGTGGTGGAAACAGAGGAGCTGGGCGAGGACGCATCAGACACATCATCTTCTCAGAGCAAGAGAGAAGAACATAAGGCCAGAAGACGTGGAAACTCATCATTTTTCCTCAAGTGTTGCCACAACTTCTGCTTGTCTGATTAA 1128 43.79 MAGRSDEEHSCSNSNSFKTIASAFSRFIGDDDSEDLGAEFVFNIEPSLLIDPCCLKIGEVIGEGSCSIVYEGLYDNQLVAVKIIQPSRTSAISAEKKERFQREVMLLSRVNHENVIQFIGASIEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSFALDLSQVMAYLHTNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGKKCYDHKADVYSFSIILWELMTNKTPFKGRNNVMVAYATAKNVRPSLEEIPEDIAPLLESCWAEDPNIRPEFTVVIDSLTNLLQTFALKESSLPNVVETEELGEDASDTSSSQSKREEHKARRRGNSSFFLKCCHNFCLSD 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74710200 74713544 + Tan0003511.1 Tan03g1959 747463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1959 375 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 PRINTS Tyrosine kinase catalytic domain signature 242 264 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 PANTHER SERINE-THREONINE PROTEIN KINASE 33 317 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Tan03g1959 375 MobiDBLite consensus disorder prediction 334 355 - -
Tan03g1959 375 SUPERFAMILY Protein kinase-like (PK-like) 51 325 IPR011009 -
Tan03g1959 375 Gene3D Phosphorylase Kinase; domain 1 45 135 - -
Tan03g1959 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 SMART serkin_6 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 Pfam Protein tyrosine and serine/threonine kinase 55 312 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 CDD STKc_MAP3K-like 61 313 - -
Tan03g1959 375 FunFam Kinase suppressor of Ras 1 44 134 - -
Tan03g1959 375 ProSiteProfiles Protein kinase domain profile. 55 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g1959 375 Gene3D Transferase(Phosphotransferase) domain 1 136 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1959 Tan-Chr3:74710200 Tan07g1408 Tan-Chr7:65124226 2.00E-83 dispersed
Tan03g1959 Tan-Chr3:74710200 Tan09g2306 Tan-Chr9:72970771 4.30E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67348 PF07714 PK_Tyr_Ser-Thr 5.10E-54 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1959 - - - 0.0