Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1962 ATGCCGGCCGATATAGAAGATTCGTCCATAGCTTCTGGGGAGGCTAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTGCCCGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACAAACCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAGAGGTCCAGTAAGGAGGTTAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCACGATCCCTCTAGAGCTCTCGGTGACCTGACTGGGATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAATGTTCGAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTTATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGTGCAAAAGCTCAGCCTAAGCCGGTGGACAAACCGGATTTGGACCCTGACCCGAAAAGCGATACTCAAACGGCGGTTGCAAAACCAAGTCCGGAGCCTTCTCCGCCGCCTCCACCACCGCCATCACCTCCGGCTCCATCTCCTCCACAGTCAACTGCTGAGCTAACAACTGTGTTGCCTGTTCCTAGTCAAGAGCTGCCAGAGAATCCCTCGCAATATATCGAAGAGGCACCGGGTATGGCGGCTACGAGTGGGATCAGCAGCAGCAGCAAGAGCGCAAGCAGCAATAGCAGCACGAGAAGTAGCGGATTCGCTGGCTTATTTGCTTCGTCAACTGCATCGATAAGCCTCCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCATCAGACTATGCACCATCTTCAAGCATTGAACCTATTTCTCTGTGTCTTGCAATGAATCAAGGGCCACCGATGTTCGGAACTGCCAGCCAGGACCTCCGACCATACACACCGACGCCACAGCCTGCAATGTCTGCCACAGCATTACTCCAAAAAGCTGCTCAAATGGGTGCTGCAGCATCGAATGCGTCGTTGCTTCGTGGCTTGGGCTTAGTATCATCTTCCTCTTCAGCTGCCCAGCAAGAAAGCTTGCCATGGAACCACCCGAGACAAGTCGAACCAGATGGCATCTCGCTCGCTGCAGGGCTCGGCCTCGGACTTCCCAGTGATGGAAACTCCGGATTGAAGGAACTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACCCTCGATTTCCTCGGATTGGGAATGGCCGCTGGTGGCAGCCCCAACAGTGGCCTGGCCGCGCTAATTACATCAGTAGGCAGCGGCGTGGACGTCGCCACAACAACCCGATCGTACGGCGGTGGTGACATATCAGGCCAGGACATGAACAGAAGCAACTAA 1524 51.97 MPADIEDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPKPVDKPDLDPDPKSDTQTAVAKPSPEPSPPPPPPPSPPAPSPPQSTAELTTVLPVPSQELPENPSQYIEEAPGMAATSGISSSSKSASSNSSTRSSGFAGLFASSTASISLQPPRPPAFTDLMQAMACSDRSSDYAPSSSIEPISLCLAMNQGPPMFGTASQDLRPYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSSSAAQQESLPWNHPRQVEPDGISLAAGLGLGLPSDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVATTTRSYGGGDISGQDMNRSN 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74734412 74737516 - Tan0022429.1 Tan03g1962 747466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1962 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 464 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan03g1962 507 MobiDBLite consensus disorder prediction 185 239 - -
Tan03g1962 507 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Tan03g1962 507 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Tan03g1962 507 MobiDBLite consensus disorder prediction 11 25 - -
Tan03g1962 507 Gene3D Classic Zinc Finger 110 190 - -
Tan03g1962 507 MobiDBLite consensus disorder prediction 1 39 - -
Tan03g1962 507 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 195 - -
Tan03g1962 507 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Tan03g1962 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Tan03g1962 507 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Tan03g1962 507 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Tan03g1962 507 MobiDBLite consensus disorder prediction 190 204 - -
Tan03g1962 507 SMART c2h2final6 132 152 IPR013087 -
Tan03g1962 507 SMART c2h2final6 97 127 IPR013087 -
Tan03g1962 507 SMART c2h2final6 56 78 IPR013087 -
Tan03g1962 507 MobiDBLite consensus disorder prediction 268 288 - -
Tan03g1962 507 Gene3D Classic Zinc Finger 35 103 - -
Tan03g1962 507 MobiDBLite consensus disorder prediction 267 288 - -
Tan03g1962 507 MobiDBLite consensus disorder prediction 215 236 - -
Tan03g1962 507 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Tan03g1962 507 FunFam protein indeterminate-domain 12-like 35 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1962 Tan-Chr3:74734412 Tan05g0934 Tan-Chr5:7583683 1.20E-88 dispersed
Tan03g1962 Tan-Chr3:74734412 Tan03g1964 Tan-Chr3:74745935 6.10E-205 proximal
Tan01g1291 Tan-Chr1:12716884 Tan03g1962 Tan-Chr3:74734412 7.90E-123 transposed
Tan11g1709 Tan-Chr11:16778063 Tan03g1962 Tan-Chr3:74734412 7.10E-60 transposed
Tan01g4896 Tan-Chr1:114873037 Tan03g1962 Tan-Chr3:74734412 3.10E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27048 PF00096 zf-C2H2 0.0051 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1962 K25869 - csv:101217597 683.715