Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1963 ATGAAGAAATCCGCAGCAATTTCAGGATCGCCATTTTCATCGTCCGTTCTCATACCCATCTTCTTCCTTCTCCTCTCTCTGCCTTCAAATGCCGACGACGGACGGTGGGAAGGGGCCAGGCCTGAGGTGAAGAGAGCCAGCGAGAGAATATCACTCCTTAAAACAGAGTACGGCGAGATCTCCGCCATTGATTTCAACGATGGCTCAAGATTTGGACCTTACCATCTCCAGTTCATCACAATGGAACCCAACTCCCTGTTTCTCCCTGTTCTTCTTCATGCTGACATGGTGTTCTATATCCACACTGGAAGTGGGAGATTGAGTTGGTTTGATGATGTTGATTTGAGGGAAGTGGATTTACGGCGGGGAGATATTTACAGGCTCCATCCAGGTTCCATTTTTTACTTGCAGAGCAGCTTAGAGACCGAATGTGAAAAGTTTCGGATTTATGCTCTGTTCTCAAGCACAGATGATGATTCATACGACCCGTCCATTGGAGCCTACTCGAGTGTCACTGATCTGGTTCGCGGCTTCGACAAGAAAGTTCTCCGTGAAGCTTTCAAGGCCGCTGAGGAAGTAATAGACGAACTAATGAATGGCACAAAGCCGCCATTGATCATGCACGCCGAGGCGGCGACAAAAATCAAGAAGCCATCCACGACGACATCGACGTGGGAGTTAGAAGCTCGGTTCTTGAAAGGCTTTCTAGGAGGAGGCGCAGGAGGGATGGGATTCAATAAGAAGAAGAAGAAAAGCATATACAACGTTTATGAAGCAGACCCAGATTTTGAAAACTGCAATGGATGGAGTTTGACTGTAACCAAGAAAGTCTCCCATCAGTTAAAGGGCTCCAATGTCGGCCTCTTCGTCGTCAACCTCACAGCGGGTTCGATGATGGGTCCGCATTGGAATCCAAGGGCGTGGGAGATTGGGATCGTGACGTCGGAGGAGGCGGGGGTGGTTCGGGTGGGTTGTTCGAGCAGCAGGACGAATGGTTCCGCGTGCAAGAATTGGAGTTATGTAGTAGGGGAAGGGGACGTGTTTGTGGTGCCAAAGTTCAATCCAATGGCGCAGATGTCATTCAACAATGGATCGTTTGTGTTTGTGGGATTTAGCACGGCCAACAGATATAATGTGCCGCAGTTCTTGGCGGGAAGTAGCTCGGTGTTGCAAATTATGGACAGGGAAGTGTTGGCGTGGTCGTTTGATGTCAATGTGACGACGGTTGATCGGTTGTTGGGAGCTCGAGTTGAGTCGGTCATATTGGAGTGTACTTCTTGTGCTGAGGAGGAAGTGAGGAAAATGGAAGAGGAAGCTGAGAGAAAGAGACAAGAGGAAGAGGAAGAGAGAAAAAGAAGAGAGGAGGAAGAAGAAGAGAGAAAAAGAGAGGAAGAAGAGAGAAAAAGAAGAGAAGAGGAAGAACAGAGGGAGAGAGAAGAGGAGGAGGAAGGAAGGAGAGAGAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAAAGAGAGGAAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAGAGGGAAGAAGAAGAAGAGAGAAAGAGAAGAGAAGAGGAAGAAGAGAGGGAGAGAGAGGAAGAGAGGAAGAGAGAAGAGGAGGAAGCAAGGAGAGAGGAAGAGGAAGAGAGAGAAAGAAAGGAAGAGGAGGAGAGAAAAAGAGAGAAAGAAGAAGAGAGAAAAAGAAGAGGAGAGGAAGAACAGAGGGAGAGAGAGGAAGAGAGAAAAAGAGAAGGAGGAGAAGCAAGAGAGGAGGAGGAAGCAAGGGAGAGAGAGGAAACCTATCAAAAAGAGAGAAGGAAAAGACGGAGAGAAGCAGAGAGGGAGGCAGAAGAAAAACAGAGAAGAGCTTGGGAGGAGGAGGAGGAAAAAGAAGAAGAAGCAGAAACAGAGCCAGTGATAAGGATTTTGAGACAGTGGACATAACTCGAAACTTTCAACCACTATGCTTTCTTTTAAGCAACAGTATGCTTTTGCTTCACTCTCATGAATAA 2037 47.62 MKKSAAISGSPFSSSVLIPIFFLLLSLPSNADDGRWEGARPEVKRASERISLLKTEYGEISAIDFNDGSRFGPYHLQFITMEPNSLFLPVLLHADMVFYIHTGSGRLSWFDDVDLREVDLRRGDIYRLHPGSIFYLQSSLETECEKFRIYALFSSTDDDSYDPSIGAYSSVTDLVRGFDKKVLREAFKAAEEVIDELMNGTKPPLIMHAEAATKIKKPSTTTSTWELEARFLKGFLGGGAGGMGFNKKKKKSIYNVYEADPDFENCNGWSLTVTKKVSHQLKGSNVGLFVVNLTAGSMMGPHWNPRAWEIGIVTSEEAGVVRVGCSSSRTNGSACKNWSYVVGEGDVFVVPKFNPMAQMSFNNGSFVFVGFSTANRYNVPQFLAGSSSVLQIMDREVLAWSFDVNVTTVDRLLGARVESVILECTSCAEEEVRKMEEEAERKRQEEEEERKRREEEEEERKREEEERKRREEEEQREREEEEEGRRERKRERERERERRERKRGRERERGEREREREREKREGRRRREKEKRRGRREGERGREEERRGGSKERGRGRERKKGRGGEKKRERRREKKKRRGRTEGERGREKKRRRRSKRGGGSKGERGNLSKREKEKTERSREGGRRKTEKSLGGGGGKRRRSRNRASDKDFETVDITRNFQPLCFLLSNSMLLLHSHE 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74741442 74743978 + Tan0021704.1 Tan03g1963 747467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1963 678 MobiDBLite consensus disorder prediction 601 651 - -
Tan03g1963 678 Gene3D Jelly Rolls 245 427 IPR014710 -
Tan03g1963 678 MobiDBLite consensus disorder prediction 532 552 - -
Tan03g1963 678 MobiDBLite consensus disorder prediction 485 651 - -
Tan03g1963 678 CDD cupin_7S_vicilin-like_N 52 209 - -
Tan03g1963 678 SMART Cupin_1_3 254 410 IPR006045 -
Tan03g1963 678 SMART Cupin_1_3 44 195 IPR006045 -
Tan03g1963 678 Pfam Cupin 254 409 IPR006045 -
Tan03g1963 678 CDD cupin_7S_vicilin-like_C 261 419 - -
Tan03g1963 678 Gene3D Jelly Rolls 39 220 IPR014710 -
Tan03g1963 678 SUPERFAMILY RmlC-like cupins 21 416 IPR011051 -
Tan03g1963 678 MobiDBLite consensus disorder prediction 485 524 - -
Tan03g1963 678 PANTHER OS03G0336100 PROTEIN-RELATED 46 429 IPR050253 -
Tan03g1963 678 Coils Coil 425 498 - -
Tan03g1963 678 MobiDBLite consensus disorder prediction 553 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1963 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1963 Tan-Chr3:74741442 Tan05g0278 Tan-Chr5:2084484 1.80E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28