Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1964 ATGCCGGCCGGTTTAGACAATTCCTCGCCGGCTTCCGGCGAACCCTCTGTCTCCTCGCCCGGAAACGCCGCTTCGCCGCCCAAATCCGCCGCTAAGAAAAAGCGGAATCTCCCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCGAAGACACTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAACCTTCAGCTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAGAGGTCCAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCTAGAGCTCTCGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGAACCAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCTAGGAGGGATAGCTTCATTACGCATAGAGCTTTTTGTGATGCATTGGCTGAGGAAAGTGCAAAAGCTCAGCCTCAGTCTTTGGTGGAGAAACCGGTTTCTAATTCTAAGCCGAAAGCTCATTCTCAGAAGGCGGTGGAGCCAAATCCGGAGCCGCCTCCGCCGCCGTCACCTCCGGCGGCTTCATCTCCTCCGCAGTCAACTTGTGTTCTGTCATCTGTTTTGCCGATTCAGAGTCAAGATCGACCGGAGAATCCCCCGCCGTATAATGAAGAAGCGCCGACTACGACGGGCATGAGCGGTAGCTGCAGTAGCAGCAAGAGCCCCAGCAGCAACAGCAATTCGGGTAGACGATTTGCTAGCTTGTTCGCATCCACAACTACGTCAATAAGCCTGCAACCTCCTCGGCCCCCCGCGTTTAGTGACTTGATACATGTTATGGCTTGTTCGGATCGCTCGTCCGACTATGCTCCAACGACAACTACCGAGCCTATTTCTCTATGTCTTTCAAGTAGCCATGGGGCATCAATTTTTGGGGCTGCCAGCCAAGACCTCCGGCAGTACACACCAACTCCACAGCCACAGCCTGCAATGTCCGCTACTGCATTGCTACAAAAAGCTGCCCAAATGGGAGCAACAGCATCAAACGCCTCATTACTTCGCGGGTTGGGCTTAGTAACGTCGTCCTCTGCGGCTATGCCGCAAGAGAGCTTACCATGGAATCATAGGCAAGTCGAACCCGATGGCATCTCGATCACTGCAGGGCTCAGACTCGGACTCCCTTGTGATGGAAACTCCGGATTGAAGGAACTAATGAGGAGCAACCATTCCATATTTGCTCCAAAACACACGACCCTCGACTTCCTCGGACTGGGAATGGCAGCTGGTGGAAGCCCTAACAGCGGCTTGGCTGCGCTAATCACGTCGATAGGAGGGAGCGTGGACGTTACGACAACAACCAGACCATACGGAGCTGGTGACATAGACATGAACAGAAGCAATTGA 1521 52.27 MPAGLDNSSPASGEPSVSSPGNAASPPKSAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSLVEKPVSNSKPKAHSQKAVEPNPEPPPPPSPPAASSPPQSTCVLSSVLPIQSQDRPENPPPYNEEAPTTTGMSGSCSSSKSPSSNSNSGRRFASLFASTTTSISLQPPRPPAFSDLIHVMACSDRSSDYAPTTTTEPISLCLSSSHGASIFGAASQDLRQYTPTPQPQPAMSATALLQKAAQMGATASNASLLRGLGLVTSSSAAMPQESLPWNHRQVEPDGISITAGLRLGLPCDGNSGLKELMRSNHSIFAPKHTTLDFLGLGMAAGGSPNSGLAALITSIGGSVDVTTTTRPYGAGDIDMNRSN 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74745935 74748795 - Tan0004881.1 Tan03g1964 747468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1964 506 MobiDBLite consensus disorder prediction 236 252 - -
Tan03g1964 506 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Tan03g1964 506 MobiDBLite consensus disorder prediction 199 214 - -
Tan03g1964 506 Gene3D Classic Zinc Finger 41 108 - -
Tan03g1964 506 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Tan03g1964 506 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Tan03g1964 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tan03g1964 506 SMART c2h2final6 61 83 IPR013087 -
Tan03g1964 506 SMART c2h2final6 102 132 IPR013087 -
Tan03g1964 506 SMART c2h2final6 137 157 IPR013087 -
Tan03g1964 506 MobiDBLite consensus disorder prediction 263 288 - -
Tan03g1964 506 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Tan03g1964 506 Gene3D Classic Zinc Finger 115 195 - -
Tan03g1964 506 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 199 - -
Tan03g1964 506 MobiDBLite consensus disorder prediction 195 288 - -
Tan03g1964 506 MobiDBLite consensus disorder prediction 9 25 - -
Tan03g1964 506 MobiDBLite consensus disorder prediction 1 45 - -
Tan03g1964 506 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Tan03g1964 506 MobiDBLite consensus disorder prediction 219 235 - -
Tan03g1964 506 FunFam protein indeterminate-domain 12-like 40 108 - -
Tan03g1964 506 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Tan03g1964 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 466 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1291 Tan-Chr1:12716884 Tan03g1964 Tan-Chr3:74745935 7.10E-124 dispersed
Tan01g4896 Tan-Chr1:114873037 Tan03g1964 Tan-Chr3:74745935 2.50E-113 dispersed
Tan01g4897 Tan-Chr1:114873037 Tan03g1964 Tan-Chr3:74745935 2.50E-113 dispersed
Tan02g1942 Tan-Chr2:88019556 Tan03g1964 Tan-Chr3:74745935 9.70E-98 dispersed
Tan03g1964 Tan-Chr3:74745935 Tan06g1021 Tan-Chr6:9141105 3.30E-89 dispersed
Tan03g1962 Tan-Chr3:74734412 Tan03g1964 Tan-Chr3:74745935 6.10E-205 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27049 PF00096 zf-C2H2 0.0051 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1964 K25869 - csv:101217597 810.061