Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1972 ATGGCGAATATGTGTGCCGACAGTGGCAATCTTATGGCGATTGCTCAGCAAGTTATGAAGCAGAAGCAGCAACAGGAGCAGCAACAGCAGCAGCACCCACAGCAACCGCTGCAGCAGCTCACTGGGCCTTGCACTTTTGCTCTGAACCCATGGAGTGGCTCCAACCATGGTCTCTCCGGTGCTCCAGATTTGGGGTTTGGGCTCGCTGGAACTGGATATTCCGACCCGTTTCAGGTGCAGAGAGTTGTTGACGGTGGAGAAGCAAGCTTTCAGTTCCCGAACTTGGAGCACCATTCTTCTGCTTTCAGATTTTCCGATTTCGACGGCGGCGCTGCTGCAGATTTCGACTCTGATGAGTGGATGGACAGTCTAATGGCTGGTGGAGATTCAACGGATAGCTCTAATCTTCCTTCTGGTTGCGACGCGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCCGATCCCTTTGTCCCCTGTCCCAGTCGCCTCACTATTCCCTGTTCTTCACCCTCTGATCTTAACAGAGTCATTTTCCCTGAACCTCCGAAAAATCAAACCGCCGTTCAACCGCCGGTGGTTACATGGACAGGACTTCCGCCGGCGACTCCACCGGTGGTGGTTAAGGACACTCAGGTCCCCAACGTTCCCCTTGCGATACACAAGAGTGAAGATAACGGCGCTTCGTCGAGTTCTGCAGAGACTGAATCGACGCCGCCACTTCTTAAAACCCTAATTGAATGTGCTCGACTTGCCGAATCGGAGCCAGATCGATCGGCGCAAATGTTGATTCAGCTTAAGGAATCGTCATCGGAGCATGGAGATCCGACGGAGAGAGTAGCCTTTTACTTTCTCGAAGCTCTATGCCGGAGATTATCACTTCAATCGGAGAATCGTTTAGTTTCTTCTGAATCCAGCTCAGATGATTTCACTTTCTCTTATAAAGCTCTCAATGATGCTTGCCCCTACTCTAAATTCGCCCATTTGACTGCGAATCAAGCTATACTCGAAATGACAGAGAACGCGAGCAAGATTCACATAATTGACTTTGGGATTTCTCAGGGAGTTCAATGGGCGGCTCTACTACAAGCTCTCGCAACCCGCTCCACCGGAAAACCAACTGAAATCCGGATCTCCGGAATTCCGGCTCCGATGCTCGGGAACTGTCCGGCGACGTCGCTGTTCGCGACGGGTAATCGACTGGCCGAGTTCGCTAAGCTTCTAGAACTGAACTTCGAATTTGACCCAATCCTCACCCCAATCGAAGAGCTGAACGAATCCTCCTTCCGAATCGACTCCGACGAAACCCTCGCCGTGAATTTCATGCTTCAACTGTACAATCTCCTCGACGAAACTCCTCGCGCCGTTCTGAACGTTCTGCAACTCGCTAAATCACTGAACCCTAGAATTGTAACTCTCGGCGAATACGAAGCCAGCCTGAACCGGCTCGGGTTCTTCAACCGGTTCAAGAACGCCGTCAGATACTACTCGGCCGTGTTCGAATCACTGGACCCAAAATTACCTCGCGACTCAAACGAGAGGCTGCAACTGGAAAAGCTCGTACTCGGCCGGCAGATCGCCGGCGTTGTCGGACCGGTGTCGTCGCCGGGAGCGAAAACCGAACGAATGGAAGACAAAGAACAGTGGAAAATGATGATGGAAAATTGCGGTTATGAACCAGTAAATCTCAGCCATTACGCCAAAAGTCAAGCTCAAATCCTTTTATGGAAGTACGATTACAGCTCTGAGTATTCTTTGATCGAATCCTCACCTGGGTTTCTCTCGTTGGCCTGGAACGAAGTCCCCATCATTACAGTTTCTTCATGGCGTTGA 1833 50.95 MANMCADSGNLMAIAQQVMKQKQQQEQQQQQHPQQPLQQLTGPCTFALNPWSGSNHGLSGAPDLGFGLAGTGYSDPFQVQRVVDGGEASFQFPNLEHHSSAFRFSDFDGGAAADFDSDEWMDSLMAGGDSTDSSNLPSGCDAWQSNSDFAFYGADPFVPCPSRLTIPCSSPSDLNRVIFPEPPKNQTAVQPPVVTWTGLPPATPPVVVKDTQVPNVPLAIHKSEDNGASSSSAETESTPPLLKTLIECARLAESEPDRSAQMLIQLKESSSEHGDPTERVAFYFLEALCRRLSLQSENRLVSSESSSDDFTFSYKALNDACPYSKFAHLTANQAILEMTENASKIHIIDFGISQGVQWAALLQALATRSTGKPTEIRISGIPAPMLGNCPATSLFATGNRLAEFAKLLELNFEFDPILTPIEELNESSFRIDSDETLAVNFMLQLYNLLDETPRAVLNVLQLAKSLNPRIVTLGEYEASLNRLGFFNRFKNAVRYYSAVFESLDPKLPRDSNERLQLEKLVLGRQIAGVVGPVSSPGAKTERMEDKEQWKMMMENCGYEPVNLSHYAKSQAQILLWKYDYSSEYSLIESSPGFLSLAWNEVPIITVSSWR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74808985 74811350 + Tan0016777.1 Tan03g1972 747476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1972 610 ProSiteProfiles GRAS family profile. 232 610 IPR005202 -
Tan03g1972 610 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 234 609 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan03g1972 610 MobiDBLite consensus disorder prediction 17 45 - -
Tan03g1972 610 Pfam GRAS domain family 242 610 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1972 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1312 Tan-Chr1:12907859 Tan03g1972 Tan-Chr3:74808985 1.50E-175 dispersed
Tan03g1972 Tan-Chr3:74808985 Tan11g1400 Tan-Chr11:12468463 5.50E-51 dispersed
Tan03g1972 Tan-Chr3:74808985 Tan08g2009 Tan-Chr8:72165090 2.30E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g959 . . Bda04g00052 . . Bpe13g00449 . . Cmo04g00840 Cmo16g00713 Cma03g00756 Cma07g00493 Car03g00690 Car07g00433 Sed10g0914 Cpe19g00807 Cpe10g00605 Bhi03g01287 Tan03g1972 Cmetu08g0213 . Hepe04g1503 . . Cla01g01901 Cam01g1990 . . Clacu01g2009 Cmu01g1880 . . . Cone6ag1617 Cone9ag1542 Lsi01g00680 . Chy07g01294 Cme08g00842 Blo05g00794 . Bda11g01872 . . . . Bma06g00126 . Cmo03g00782 Cmo07g00492 Cma16g00656 . . . . Cpe14g00561 . . . . . . . Cla07g00872 Cam07g0944 Cec07g1011 Cco07g0988 Clacu07g0918 Cmu07g0917 Cre07g1288 Lsi07g00202 Csa06g03233 Chy02g00656 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g2009 . 77 758 GRAS Transcription Factor Family AT2G37650 54.1 1.1e-196 684.1
Tan01g2424 . 234 695 GRAS Transcription Factor Family AT3G46600 51.0 6.6e-128 455.3
Tan03g1648 . 51 471 GRAS Transcription Factor Family AT3G49950 59.3 1.9e-135 479.9
Tan01g1287 . 82 553 GRAS Transcription Factor Family AT4G36710 53.3 8.4e-127 451.4
Tan01g0990 . 22 443 GRAS Transcription Factor Family AT5G41920 65.6 2.9e-149 525.8
Tan03g0654 . 469 845 GRAS Transcription Factor Family AT5G41920 56.6 6.2e-115 411.8
Tan03g1972 . 1 610 GRAS Transcription Factor Family AT5G66770 56.8 6.7e-179 624.8
Tan01g1312 . 6 526 GRAS Transcription Factor Family AT5G66770 58.3 8.8e-155 544.7
Tan05g0966 . 53 541 GRAS Transcription Factor Family AT1G50600 59.4 2.9e-165 579.3
Tan05g0965 . 53 541 GRAS Transcription Factor Family AT1G50600 59.4 2.9e-165 579.3
Tan01g1808 . 44 543 GRAS Transcription Factor Family AT1G50600 58.1 1.5e-161 567.0
Tan03g2236 . 111 549 GRAS Transcription Factor Family AT1G50600 56.6 2.7e-139 493.0
Tan01g4496 . 205 592 GRAS Transcription Factor Family AT1G50600 58.1 5.3e-135 478.8
Tan01g3354 . 195 576 GRAS Transcription Factor Family AT1G50600 50.5 1.2e-107 387.9
Tan01g3355 . 195 576 GRAS Transcription Factor Family AT1G50600 50.5 1.2e-107 387.9
Tan11g1747 . 44 575 GRAS Transcription Factor Family AT1G14920 68.8 3.7e-208 721.8
Tan11g1400 . 48 589 GRAS Transcription Factor Family AT1G14920 61.2 2.4e-183 639.4
Tan04g2033 . 1 545 GRAS Transcription Factor Family AT1G14920 55.6 2.6e-161 566.2
Tan01g1930 . 41 390 GRAS Transcription Factor Family AT1G55580 50.9 7.8e-95 345.1
Tan11g1400 . 45 590 GRAS Transcription Factor Family AT1G66350 61.7 4.3e-182 635.2
Tan11g1747 . 1 573 GRAS Transcription Factor Family AT1G66350 57.5 4.3e-174 608.6
Tan04g2033 . 1 544 GRAS Transcription Factor Family AT1G66350 57.5 2.5e-166 582.8
Tan05g0966 . 19 541 GRAS Transcription Factor Family AT5G48150 66.9 2.5e-195 679.1
Tan05g0965 . 19 541 GRAS Transcription Factor Family AT5G48150 66.9 2.5e-195 679.1
Tan01g1808 . 17 543 GRAS Transcription Factor Family AT5G48150 59.7 9.9e-176 614.0
Tan03g2236 . 16 549 GRAS Transcription Factor Family AT5G48150 52.6 4.9e-151 531.9
Tan01g4496 . 127 592 GRAS Transcription Factor Family AT5G48150 53.1 2.4e-137 486.5
Tan11g1747 . 46 572 GRAS Transcription Factor Family AT2G01570 70.0 8.4e-214 740.7
Tan11g1400 . 52 587 GRAS Transcription Factor Family AT2G01570 63.0 2.5e-186 649.4
Tan04g2033 . 27 548 GRAS Transcription Factor Family AT2G01570 59.6 5.5e-165 578.6
Tan11g1400 . 45 590 GRAS Transcription Factor Family AT1G66350 61.7 4.3e-182 635.2
Tan11g1747 . 1 573 GRAS Transcription Factor Family AT1G66350 57.5 4.3e-174 608.6
Tan04g2033 . 1 544 GRAS Transcription Factor Family AT1G66350 57.5 2.5e-166 582.8
Tan11g1400 . 52 587 GRAS Transcription Factor Family AT3G03450 62.2 1.4e-178 623.6
Tan11g1747 . 46 572 GRAS Transcription Factor Family AT3G03450 61.0 5.7e-172 601.7
Tan04g2033 . 27 545 GRAS Transcription Factor Family AT3G03450 58.7 2.5e-159 559.7
Tan11g1400 . 48 589 GRAS Transcription Factor Family AT5G17490 58.9 2.1e-163 573.2
Tan11g1747 . 42 572 GRAS Transcription Factor Family AT5G17490 57.2 4.2e-156 548.9
Tan04g2033 . 24 546 GRAS Transcription Factor Family AT5G17490 54.4 4.8e-144 508.8
Tan01g3354 . 1 576 GRAS Transcription Factor Family AT1G21450 57.2 3.5e-175 612.5
Tan01g3355 . 1 576 GRAS Transcription Factor Family AT1G21450 57.2 3.5e-175 612.5
Tan01g1808 . 167 543 GRAS Transcription Factor Family AT1G21450 53.4 4.8e-116 416.0
Tan03g2236 . 171 549 GRAS Transcription Factor Family AT1G21450 50.5 7.4e-109 392.1
Tan01g4496 . 224 592 GRAS Transcription Factor Family AT1G21450 50.3 3.4e-106 383.3
Tan01g2424 . 252 695 GRAS Transcription Factor Family AT5G59450 51.4 2.5e-128 456.8
Tan03g2236 . 1 549 GRAS Transcription Factor Family AT4G17230 59.5 3.9e-178 622.1
Tan05g0966 . 26 541 GRAS Transcription Factor Family AT4G17230 51.3 6.3e-144 508.4
Tan05g0965 . 26 541 GRAS Transcription Factor Family AT4G17230 51.3 6.3e-144 508.4
Tan01g1808 . 54 543 GRAS Transcription Factor Family AT4G17230 53.2 7.5e-137 485.0
Tan01g4496 . 219 592 GRAS Transcription Factor Family AT4G17230 52.7 1.9e-111 400.6
Tan05g0966 . 130 541 GRAS Transcription Factor Family AT2G04890 67.1 1.2e-161 567.0
Tan05g0965 . 130 541 GRAS Transcription Factor Family AT2G04890 67.1 1.2e-161 567.0
Tan01g1808 . 165 543 GRAS Transcription Factor Family AT2G04890 64.6 7.6e-145 511.1
Tan01g4496 . 183 592 GRAS Transcription Factor Family AT2G04890 55.6 2.9e-128 456.1
Tan03g2236 . 170 549 GRAS Transcription Factor Family AT2G04890 57.9 6.9e-122 434.9
Tan09g0798 . 1 471 GRAS Transcription Factor Family AT1G50420 67.6 1.6e-178 623.2
Tan04g0568 . 1 462 GRAS Transcription Factor Family AT1G50420 61.1 5.9e-157 551.6
Tan01g2024 . 410 773 GRAS Transcription Factor Family AT4G00150 55.4 2.6e-103 373.6
Tan03g1972 . 1 610 GRAS Transcription Factor Family AT3G50650 50.4 2.2e-152 536.6
Tan01g1312 . 9 525 GRAS Transcription Factor Family AT3G50650 51.9 9.7e-132 468.0
Tan03g0654 . 189 843 GRAS Transcription Factor Family AT3G54220 60.7 1.4e-204 710.3
Tan01g0990 . 76 441 GRAS Transcription Factor Family AT3G54220 63.1 7.3e-134 475.3
Tan03g1662 . 101 490 GRAS Transcription Factor Family AT4G37650 68.2 8.5e-157 551.2
Tan05g1662 . 111 494 GRAS Transcription Factor Family AT4G37650 57.9 2.9e-128 456.4
Tan05g1663 . 2 358 GRAS Transcription Factor Family AT4G37650 59.2 1.8e-122 437.2
Tan06g1555 . 58 454 GRAS Transcription Factor Family AT4G37650 50.2 1.1e-114 411.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27050 PF03514 GRAS 5.50E-110 CL0063 Tan TF