Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1978 ATGTGGAATCGAAGCTTCAGCAGCAATGCATATGCAACGCGCGCAGTGTTGAAGGAGAAGAAATGGGATGCGCTCATCGTCGGCGCCGGCCACAACGGTTTGATAGCCGCCGCTTATCTTGCCCGCGGCGGTCTCTCTGTCGCTGTGCTTGAGAGGCGCCATGTGATTGGCGGCGCTGCTGTTACTGAAGAGTTAATTCCAGGGTTTAAGTTCTCTCGCTGTAGTTACCTTCTAAGCCTCCTTCGGCCCTCCATCATCAGGGACTTGGAACTGAAGAGACATGGATTGAAGCTATTGAAACCGATGGCCGCAGCTTTTACACCCTGTCTCGATGGTCGTCATCTTCTACTTGGGATGAACCATGAACATGATTACTTGGAGATATCTAAGTTTTCCAAAAGGGATGCCGATGCTTACCCGAGATATGAAAGACAGCTTCATAAGTATTGTAAATTCATGGATTTTATCTTGGATTCGCCTACTCCTGAAGCATTACACCGGGGTTCATCATTTAATGATCGGTTGAGAGATAAGATGCAAAACTCTATTTTCTGGGGTCGTTGTCTCCGGCATGCGGTATCATTAGGTCAAAAAGATATGGCGGAGTTGATAAACCTTCTAGTATCGCCAACTTCTAAGGTCTTAAATGAGTGGTTTGAGTCAGACGTATTGAAGGCAACACTTGCAGGAGATGCCATCATTGGGACTATGACAAGCATCCATAATTCTGGAAGTGGATATGTTCTACTACATCATGTAATGGGAGAAACTACTCATGGTGACCGTAATATTTGGTCACATGTTGAAGGTGGGATGGGTGCTGTATCCATGGCCATTAGTAATGCTGCCAAAGAAGCTGGAGTTCATATTGCAACAAATGCAGAGGTTTCAGAATTGATGATTGAAGACTCTGGTAGATTAAAGGGGGTGTTACTGGCTGATGGGACACAAGTGCATTCTTCGGTTGTTTTGTCAAATGCAACCCCGTACAAGACATTCGTGGAAATGGTGCCTCAAACTTTCCTTCCAGATGATTTTCTACATTCTATCAAATGTTCCGACTATACCTCAGGAACAACAAAGATAAACGTTGCTGTTGACAAATTGCCGCAGTTCCAGTCTTGCAATTTGAATAATCAAGAGGAGGTGGGTCCTCAGCATACAGCAACTATTCATATTGGTGCTGAAAGAATGGAAGATATTGGCATAGCTTGCCAAGATGCATGGAATGGCTTTCCATCAAAAAGACCTGTTATGGAGATGACAATTCCTTCCTCTCTGGACAAAACTGTATCTCCACCTGGTAAGCACGTAGTCAGTTTATTTACACAGTATACACCTTACAAACCCTTGGATGGGAGCTGGGAAGATGTTACATACAGAGATTTATATGCCCAAAGATGTTTTAAGTTGATTGATGAATATGCACCTGGCTTCAGCTCATCAATCATTGGTTATGACATGCTGACACCACCTGATCTTGAGAGGGAAATTGGTCTGACAGGAGGAAATATTTTTCATGGGGCTATGGGTTTGGATTCTCTTTTCTTGATGCGGCCTGTAAAAGGATGGTCAAATCACAGGTCCCCAATAAAAGGACTATACCTCTGCGGTAGCGGGTCGCATCCTGGAGGTGGTGTCATGGGGGCACCAGGTCGCAATGCTGCACGTGTCGTTCTTGAGGACCTGTGTAAGCCAGAGCTTTAG 1707 44.99 MWNRSFSSNAYATRAVLKEKKWDALIVGAGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLLSLLRPSIIRDLELKRHGLKLLKPMAAAFTPCLDGRHLLLGMNHEHDYLEISKFSKRDADAYPRYERQLHKYCKFMDFILDSPTPEALHRGSSFNDRLRDKMQNSIFWGRCLRHAVSLGQKDMAELINLLVSPTSKVLNEWFESDVLKATLAGDAIIGTMTSIHNSGSGYVLLHHVMGETTHGDRNIWSHVEGGMGAVSMAISNAAKEAGVHIATNAEVSELMIEDSGRLKGVLLADGTQVHSSVVLSNATPYKTFVEMVPQTFLPDDFLHSIKCSDYTSGTTKINVAVDKLPQFQSCNLNNQEEVGPQHTATIHIGAERMEDIGIACQDAWNGFPSKRPVMEMTIPSSLDKTVSPPGKHVVSLFTQYTPYKPLDGSWEDVTYRDLYAQRCFKLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNHRSPIKGLYLCGSGSHPGGGVMGAPGRNAARVVLEDLCKPEL 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74843772 74849369 - Tan0004611.1 Tan03g1978 747482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1978 568 Gene3D - 226 371 IPR036188 -
Tan03g1978 568 Pfam NAD(P)-binding Rossmann-like domain 26 75 - -
Tan03g1978 568 SUPERFAMILY FAD/NAD(P)-binding domain 20 443 IPR036188 -
Tan03g1978 568 Gene3D - 21 124 IPR036188 -
Tan03g1978 568 PANTHER PHYTOENE DEHYDROGENASE 9 564 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1978 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1222 Tan-Chr1:11854951 Tan03g1978 Tan-Chr3:74843772 4.60E-191 dispersed
Tan01g1223 Tan-Chr1:11854951 Tan03g1978 Tan-Chr3:74843772 5.90E-161 dispersed
Tan01g1221 Tan-Chr1:11853205 Tan03g1978 Tan-Chr3:74843772 1.60E-249 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g970 . . . . . . Bma09g00076 . . Cmo16g00663 Cma03g00750 . Car03g00685 . Sed14g1114 . . Bhi03g01291 Tan03g1978 Cmetu07g0294 . Hepe04g1510 . . . . . . . . . . . . . Lsi01g00676 . . . . . Bda11g01868 . . . . . . Cmo03g00779 . Cma16g00608 . . . . . . . . . . . . Cla07g00795 Cam07g0860 Cec07g0911 Cco07g0893 Clacu07g0834 Cmu07g0838 Cre07g1195 Lsi07g00266 . Chy02g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001846 2 2 2 3 2 3 2 4 3 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 1 2 4 2 68