Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1983 ATGATTCAAAACCTAGCTTTTAACCACAAATCATTCACCGCCGCCGTGACCTTCCCTTTCACTCGATCGACGCCGATGGCCAAAAGAACCCGCCGGAAGTTTCTCTTACAGTCCGAGTCTCAAACCGAGGCCAATCCTCTCCCTCCATCGTCATCCTCCAAGCTTCCATTCCGATCCACCAAAATACGGAAGATTTCCTCCCCTCAAGAACCGGCCAAACCAGAAATCTCAACTCCCGGCGGCGGCGACCCCGTCAAATCATTATCGTCCTCGGATGAAATTTTCACAGCGATCGATCATTTACGCAGTTCGGATCCTCTCCTAATAAGTCTATTAGATTCAAGCGAATCACCTAATTTCAAATCGAATCCACCGTTTCTAGCCCTAGCAAAGAGCATTCTCTACCAGCAGCTCGCCACGAAGGCCGCCGAATCGATCTACAATCGCTTCGCCGCCCTATGCGGCGGTGAGGCAGGGGTGCTGCCGGCCGCCGTTCTGGCACTCTCGCCGCAACAGCTGCGAGTAATCGGAGTTTCAGGGAGGAAATCAAGCTACCTCCATGACCTAGCGACGAAATTCGTAGAGGGAATTTTGTCGAATTCTTCGATTCTGGAGATGGACGACGAGACTCTATTGAGTGCGTTGACGGCGGTGAAGGGAATCGGCGTTTGGTCGGTGCATATGTTCATGATCTTCACTCTGCACCGGCCGGATGTGCTGCCGGTGGGGGATTTGGGGGTGAGAAAAGGGGTGCAGAGATTGTACGGACTGAAGGAATTGCCGAAGCCAGTGGAGATGGAGAAACTGTGTGAGAAATGGAAGCCTTACAGATCGATGGGGGCTTGGTACATGTGGCGGCTAATGGAAGTGAAGGAAATCGTGAAATAA 888 52.03 MIQNLAFNHKSFTAAVTFPFTRSTPMAKRTRRKFLLQSESQTEANPLPPSSSSKLPFRSTKIRKISSPQEPAKPEISTPGGGDPVKSLSSSDEIFTAIDHLRSSDPLLISLLDSSESPNFKSNPPFLALAKSILYQQLATKAAESIYNRFAALCGGEAGVLPAAVLALSPQQLRVIGVSGRKSSYLHDLATKFVEGILSNSSILEMDDETLLSALTAVKGIGVWSVHMFMIFTLHRPDVLPVGDLGVRKGVQRLYGLKELPKPVEMEKLCEKWKPYRSMGAWYMWRLMEVKEIVK 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74893708 74895312 + Tan0004752.1 Tan03g1983 747487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1983 295 Gene3D Hypothetical protein; domain 2 125 236 - -
Tan03g1983 295 SMART endo3end 134 289 IPR003265 GO:0006284(InterPro)
Tan03g1983 295 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 21 292 IPR051912 GO:0005634(PANTHER)|GO:0006285(PANTHER)|GO:0006307(PANTHER)|GO:0008725(PANTHER)|GO:0032131(PANTHER)|GO:0032993(PANTHER)|GO:0043916(PANTHER)
Tan03g1983 295 Gene3D - 100 286 - -
Tan03g1983 295 CDD ENDO3c 126 287 IPR003265 GO:0006284(InterPro)
Tan03g1983 295 MobiDBLite consensus disorder prediction 37 87 - -
Tan03g1983 295 FunFam DNA-3-methyladenine glycosylase II 122 236 - -
Tan03g1983 295 SUPERFAMILY DNA-glycosylase 123 287 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Tan03g1983 295 MobiDBLite consensus disorder prediction 37 66 - -
Tan03g1983 295 Pfam HhH-GPD superfamily base excision DNA repair protein 131 274 IPR003265 GO:0006284(InterPro)
Tan03g1983 295 FunFam Probable DNA-3-methyladenine glycosylase 2 212 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1983 K01247 - - csv:101219253 439.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4929 Tan-Chr1:115039821 Tan03g1983 Tan-Chr3:74893708 2.50E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g979 . . . Bda10g00135 . . . Bma15g00996 . . Cma03g00747 . Car03g00681 . Sed14g1122 . Cpe10g00616 Bhi03g01301 Tan03g1983 Cmetu08g0437 . Hepe04g1517 . . Cla01g01912 Cam01g1999 Cec04g1654 Cco04g1716 Clacu01g2018 Cmu01g1892 Cre04g1568 . . Cone6ag1624 . Lsi01g00672 . . Cme08g00849 . Blo06g00134 . . Bpe10g00120 . . . . Cmo03g00774 . . . . . . . . . . . . . . . . . . . . . . Csa06g03241 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011094 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31