Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1984 ATGGAGAGTGGGGTGGACCAAATAAAGTCCCCTTCTGCTCTCATCACTTTATTCTCCAAACCCACACCTGCGGCTTCCGATCTTGGGTTTGGGCGGTTTGTAGCACTTGCGAGTGATGGAGGACGCAAGAAAACACCAGAGATTAGCCATGGAATCTGGAATATAATGGAGATGAGAGGTGAAGATGAGGAAATAGAAACTCCTTCCCCTTTGTGCTATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCACATCTAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACAGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATCTACACAAACACACAAGAGACCATCCTGAAGCAACCCCAGATCCAGTCCAGACCTTCGTTACTGCCTCACCATCTGCTGTTACTCAGCAGGTTGCCAGCAGCAGATCAATCCCAAGAACACCACTTGCAAGTGCAACGGACAACAATAATATTATTCCTTCATCGGTTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTCGATGGCTGTGGCGAGTTCATGCCAGGTGGGGAAGATGGAACACCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGATGAAAGATCACGAGCCCTCGCCGCAAGCTTTACCCAGTAGCTACTTCATCTCCAACTCCGTCAGAAACAATGGCCATCGCACTAATAGAACGCCAGTTCCACTCTCCCGTCATCATCAATTGCCAGCAGTCCCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCCAGTGAAGATCTGAACATGTATCACCAGTCCAATAATGGAGCCCGAGACCTGTTCGGTCAGCAGCCACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGATAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAATTGGAAGTGCAGCAGTTCTGTGCTGAGACGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAGGCCATGAAGAAGAAACAAATTTGTGATTGCAAGAATATATTTGGTGAAAATTTGAGGAAAAAGATATGTTCTTCTGTCTTTAATGTCAATAAAAGGCTACAGCGTCCTCACATGTCTTATACGCGTCGGCATATACATCTAGAGCCTGAAATCACCATAAACCCAAGGTCTCTAGGGCGTCTTATTCTCCAAGTTGGCTTTCATAAAATGTGTCCCATTCCCAAATCCACCTTCCCTTCAAATTCCCCAATTTGTGAAATGGGGGTTGGCTTCAAAAAATGGAAGATGCTTCAACTTTACCATGCGGCACTACTTCTGACAGGCAACCATAATGCATCTTCAGCTTTATAA 1488 45.3 MESGVDQIKSPSALITLFSKPTPAASDLGFGRFVALASDGGRKKTPEISHGIWNIMEMRGEDEEIETPSPLCYNPSSNRESSTKLPNSDNPHLTAADRRRDHTVPQLHFSHQQNQNHHKLSLHQYLHKHTRDHPEATPDPVQTFVTASPSAVTQQVASSRSIPRTPLASATDNNNIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKEMKDHEPSPQALPSSYFISNSVRNNGHRTNRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHQSNNGARDLFGQQPQLMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAETGVRRQVFKVWMHNNKQAMKKKQICDCKNIFGENLRKKICSSVFNVNKRLQRPHMSYTRRHIHLEPEITINPRSLGRLILQVGFHKMCPIPKSTFPSNSPICEMGVGFKKWKMLQLYHAALLLTGNHNASSAL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74903103 74909933 + Tan0013253.1 Tan03g1984 747488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1984 495 FunFam Zinc-finger homeodomain protein 2 313 383 - -
Tan03g1984 495 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 183 232 IPR006456 -
Tan03g1984 495 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 182 233 IPR006456 -
Tan03g1984 495 Pfam ZF-HD protein dimerisation region 181 233 IPR006456 -
Tan03g1984 495 NCBIfam homeobox domain, ZF-HD class 322 379 IPR006455 -
Tan03g1984 495 Gene3D - 312 383 - -
Tan03g1984 495 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 146 380 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan03g1984 495 MobiDBLite consensus disorder prediction 70 90 - -
Tan03g1984 495 MobiDBLite consensus disorder prediction 60 95 - -
Tan03g1984 495 SUPERFAMILY Homeodomain-like 319 383 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1984 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1242 Tan-Chr1:11986197 Tan03g1984 Tan-Chr3:74903103 1.00E-48 dispersed
Tan02g1974 Tan-Chr2:88483873 Tan03g1984 Tan-Chr3:74903103 3.20E-55 dispersed
Tan03g1814 Tan-Chr3:73750807 Tan03g1984 Tan-Chr3:74903103 5.50E-42 dispersed
Tan03g1984 Tan-Chr3:74903103 Tan11g2213 Tan-Chr11:61205966 1.00E-42 dispersed
Tan03g1984 Tan-Chr3:74903103 Tan02g2444 Tan-Chr2:93022400 8.20E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27052 PF04770 ZF-HD_dimer 2.30E-30 No_clan Tan TF