Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g1987 | ATGTCCTTCAAAAGCTTTTTTCGCGAGCTATGGGAAAGCAAAGATGGACTCGGAATCAAATCGAGGCGAGGGGGAGAAGGAAGGAACTGGCGAAGTCGAACAAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAGCAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATAAGAAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTCGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACAAAGGAAGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCATTGAAACAGCCGGGACCTCGGGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGATAAACTGTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACGGGTACAGATTTTGTTATATCACTGGTAGCTGATGATTTTTCCTGGACCTGCAGTGCCTATGTAGGCAAATTAAGGTCCAACTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAATTCTCACTGTAGTGCAACAGAATAATCAATCAAATCGTAGGTTTCATGCTAAGCAAGTCTCTCCAAGAATGTCAGCTTGTAACTACCCTATAGGGGCAATCTCTTATGAGCTCAATGTTCTACGGACTAGAGGGCCCAGAAGAATGCACTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACCGGGAGGAAATGCACCGACACCGACCTCATTCACGTCCTGTGTCGATGACCATCACCCTCCTCTACCGGCTTCTAAAGGAAAGGAGCCAGAGCCAAACACAGATTTGAGTTCCACAAGCATCCAAGGGGTACCAGTTCAAGAATTGGGAGAATCCTTGGTGCTCAAGAATAAGGCCCCTAGATGGCACGAACAGCTTCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAGAATTTTCAACTCGTGGCTGATGTAGATCCCGCCCTCAACATGTCAGCTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACAATGGATTATCGCTACCCACTCTCCGCCTTCCAAGCCTTTGCGATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTGTGAATAG | 1245 | 46.83 | MSFKSFFRELWESKDGLGIKSRRGGEGRNWRSRTRSHIAPDEVPPQPEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENESDKLLLAAKRVRRATGTDFVISLVADDFSWTCSAYVGKLRSNFFGTRFTMYDSQPPILTVVQQNNQSNRRFHAKQVSPRMSACNYPIGAISYELNVLRTRGPRRMHCVMHSIPASCIQPGGNAPTPTSFTSCVDDHHPPLPASKGKEPEPNTDLSSTSIQGVPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALNMSAEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 74918437 | 74921868 | - | Tan0022810.1 | Tan03g1987 | 747491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g1987 | 414 | PANTHER | TUBBY-RELATED | 47 | 413 | - | - | |
Tan03g1987 | 414 | MobiDBLite | consensus disorder prediction | 278 | 310 | - | - | |
Tan03g1987 | 414 | ProSitePatterns | Tub family signature 2. | 399 | 414 | IPR018066 | - | |
Tan03g1987 | 414 | Pfam | Tub family | 116 | 409 | IPR000007 | - | |
Tan03g1987 | 414 | SUPERFAMILY | F-box domain | 49 | 99 | IPR036047 | GO:0005515(InterPro) | |
Tan03g1987 | 414 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Tan03g1987 | 414 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Tan03g1987 | 414 | PRINTS | Tubby superfamily signature | 392 | 414 | IPR000007 | - | |
Tan03g1987 | 414 | PRINTS | Tubby superfamily signature | 324 | 341 | IPR000007 | - | |
Tan03g1987 | 414 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Tan03g1987 | 414 | PRINTS | Tubby superfamily signature | 342 | 358 | IPR000007 | - | |
Tan03g1987 | 414 | PRINTS | Tubby superfamily signature | 371 | 390 | IPR000007 | - | |
Tan03g1987 | 414 | MobiDBLite | consensus disorder prediction | 22 | 38 | - | - | |
Tan03g1987 | 414 | ProSitePatterns | Tub family signature 1. | 342 | 355 | IPR018066 | - | |
Tan03g1987 | 414 | CDD | F-box_AtTLP-like | 55 | 99 | - | - | |
Tan03g1987 | 414 | Pfam | F-box-like | 55 | 98 | IPR001810 | GO:0005515(InterPro) | |
Tan03g1987 | 414 | Gene3D | Tubby Protein; Chain A | 113 | 414 | IPR025659 | - | |
Tan03g1987 | 414 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 414 | IPR025659 | - | |
Tan03g1987 | 414 | MobiDBLite | consensus disorder prediction | 22 | 47 | - | - | |
Tan03g1987 | 414 | Gene3D | - | 48 | 101 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1987 | Tan-Chr3:74918437 | Tan10g0947 | Tan-Chr10:8248324 | 2.20E-120 | dispersed | |
Tan03g1987 | Tan-Chr3:74918437 | Tan03g1988 | Tan-Chr3:74918437 | 2.10E-248 | tandem | |
Tan06g0484 | Tan-Chr6:3594205 | Tan03g1987 | Tan-Chr3:74918437 | 8.40E-11 | transposed | |
Tan01g4949 | Tan-Chr1:115269461 | Tan03g1987 | Tan-Chr3:74918437 | 1.70E-144 | wgd | |
Tan01g1235 | Tan-Chr1:11934285 | Tan03g1987 | Tan-Chr3:74918437 | 3.40E-177 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27053 | PF01167 | Tub | 4.80E-103 | CL0395 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g1987 | K19600 | - | csv:101221704 | 745.732 |