Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1987 ATGTCCTTCAAAAGCTTTTTTCGCGAGCTATGGGAAAGCAAAGATGGACTCGGAATCAAATCGAGGCGAGGGGGAGAAGGAAGGAACTGGCGAAGTCGAACAAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAGCAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATAAGAAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTCGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACAAAGGAAGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCATTGAAACAGCCGGGACCTCGGGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGATAAACTGTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACGGGTACAGATTTTGTTATATCACTGGTAGCTGATGATTTTTCCTGGACCTGCAGTGCCTATGTAGGCAAATTAAGGTCCAACTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAATTCTCACTGTAGTGCAACAGAATAATCAATCAAATCGTAGGTTTCATGCTAAGCAAGTCTCTCCAAGAATGTCAGCTTGTAACTACCCTATAGGGGCAATCTCTTATGAGCTCAATGTTCTACGGACTAGAGGGCCCAGAAGAATGCACTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACCGGGAGGAAATGCACCGACACCGACCTCATTCACGTCCTGTGTCGATGACCATCACCCTCCTCTACCGGCTTCTAAAGGAAAGGAGCCAGAGCCAAACACAGATTTGAGTTCCACAAGCATCCAAGGGGTACCAGTTCAAGAATTGGGAGAATCCTTGGTGCTCAAGAATAAGGCCCCTAGATGGCACGAACAGCTTCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAGAATTTTCAACTCGTGGCTGATGTAGATCCCGCCCTCAACATGTCAGCTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACAATGGATTATCGCTACCCACTCTCCGCCTTCCAAGCCTTTGCGATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTGTGAATAG 1245 46.83 MSFKSFFRELWESKDGLGIKSRRGGEGRNWRSRTRSHIAPDEVPPQPEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENESDKLLLAAKRVRRATGTDFVISLVADDFSWTCSAYVGKLRSNFFGTRFTMYDSQPPILTVVQQNNQSNRRFHAKQVSPRMSACNYPIGAISYELNVLRTRGPRRMHCVMHSIPASCIQPGGNAPTPTSFTSCVDDHHPPLPASKGKEPEPNTDLSSTSIQGVPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALNMSAEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74918437 74921868 - Tan0022810.1 Tan03g1987 747491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1987 414 PANTHER TUBBY-RELATED 47 413 - -
Tan03g1987 414 MobiDBLite consensus disorder prediction 278 310 - -
Tan03g1987 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Tan03g1987 414 Pfam Tub family 116 409 IPR000007 -
Tan03g1987 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515(InterPro)
Tan03g1987 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Tan03g1987 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Tan03g1987 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Tan03g1987 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Tan03g1987 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Tan03g1987 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Tan03g1987 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Tan03g1987 414 MobiDBLite consensus disorder prediction 22 38 - -
Tan03g1987 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Tan03g1987 414 CDD F-box_AtTLP-like 55 99 - -
Tan03g1987 414 Pfam F-box-like 55 98 IPR001810 GO:0005515(InterPro)
Tan03g1987 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Tan03g1987 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Tan03g1987 414 MobiDBLite consensus disorder prediction 22 47 - -
Tan03g1987 414 Gene3D - 48 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1987 Tan-Chr3:74918437 Tan10g0947 Tan-Chr10:8248324 2.20E-120 dispersed
Tan03g1987 Tan-Chr3:74918437 Tan03g1988 Tan-Chr3:74918437 2.10E-248 tandem
Tan06g0484 Tan-Chr6:3594205 Tan03g1987 Tan-Chr3:74918437 8.40E-11 transposed
Tan01g4949 Tan-Chr1:115269461 Tan03g1987 Tan-Chr3:74918437 1.70E-144 wgd
Tan01g1235 Tan-Chr1:11934285 Tan03g1987 Tan-Chr3:74918437 3.40E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27053 PF01167 Tub 4.80E-103 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1987 K19600 - csv:101221704 745.732