Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g1990 ATGGAAGCTCCAGTAAGGGCATTTCGCCCCTACGTTCTTAATCGCCGCCTGCTCTCAAAAACAATTCCTCCATCGCGCCTCGTTTTATCTCCTGAATCTAATTGGAGCGCAATTTTCCAGCAATCTTCAACCTATTTCCATCCTCCTCCCTCTCGAAAGTGCTCCAGTTCCAAAATATCACTCTCACTCAATCTTTCTCGCTGCTCCTCCTTGCCCTTTGGATCTTCTTCATCTTCGCTTGGCTCAAGCCCTTCTAATTTTCTTTCTTCTTCACCCTCAATACAATCTTTCGGCTCTCAATTCGGGCCTGATCACTTCAATTCGTTCCTATCCGACTCGAACGGCAGTACCTGGACTTGGAATCGAGCTTCAGAGAGTGCAATTAGGGGAAACGCGGGAGTTTTGGGGGGCGAAAAGGGATCGGCAACCGTTGTGTTGTTAGGTTGGCTCGGGTCGAAGACTAAGCATCTGAGGAGGTACGTGGAGTGGTACAATGCAAGAGGAATCAACGCCTTGACGTTTGTAGTTGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAGAGTCGAGCAGCGGATTTCGGATTTGGCAGTTGAACTCATTTCTTGGTTATCAGACGGCGAAGAGAGCGATAAAGATCGGTCCCTAATTTTTCACACTTTTAGCAATACAGGCTGGTTTGTGTACGGAGCCATTCTCGAAATTCTGCAGGGGCGGAAGGATTTGTTGGAGAAGATCAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTACATCTCCTGTCGTTAATGGAGAGAAAGTAGACAAGAAACCTCTTTTGATGGAAACCCTTGTTCTATCAACGTTGGAGAAGTTTTTCTCAGTCGCTTTGAAGTTGCCAGACGTCGATAAGAGATTGAAGAAGATTGTTTCAGTACTTACAGAAAACCAGCCTTTGTATCCTGAGCTTTATCTATACAGTTCAGGAGATAAAGTCGTGCCATTCGAGTCAATCGAGCTACTTATCGAGAAGAGGAAGAAGACGGGAAGGAAGAACAGACCCATATCGGCGAAGATGAACGATTTGATGACGAAATCGTTCCTAAGTTATGTGGAATTAAAGAAACAGGCGCAGAGGGACGCCGGCGGCGTCTTCGACATCGAATCCGGCGGCCAAGAATTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGAGGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAATCGACATTCAAAAACTGAATCAAGAAGCGAAATCAACCCACAACGCCAAAATCCTCCGCGGATTAAGAGACCGAATCGACTCCGACATGGTCTCAATCCTCCGCAGAGCAAAGCTTCTCAAAGAGAAATTGGCCTCTCTCGACCAATCAAACGCCGACAACCGCCTGATCTCCGTCGCGTACGGCGAGGGAACCGCCGTGGACAGAACAAGAACCTCGATCACGAACGGACTGAGAGTGAAACTGAGAGAAATGATGAACGAATTCCAGTCTCTGAGAGAAAAAGTCGTGGCGGATCACAAGGAAGATTTGAGAAGAAGGTATTTCAGTGCAAATGGGGAACAACCCAGTGAAGAACAGATGGAGAAGTTCATGTCGGGGAGTTTGAAACTGGAATCGTTTGGAGGGAAAGTGAGTGAGGACGAGTTGGGGGACCGAGTCAGGCACGAGTCGGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTAGATATGGCGATTTTGGTTGAGAGTCAAGGGGAGAAGATGGAGGATATTGAGGAGAATGTGGCGAAAGGTGGGAGGTTCATCAATGGCGGAACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGGTTTGGGCTGTGATTTTTGTTATATTGCTTGTTTGTGTTGTTGCAATGTTGGTTTGTTGA 2028 46.6 MEAPVRAFRPYVLNRRLLSKTIPPSRLVLSPESNWSAIFQQSSTYFHPPPSRKCSSSKISLSLNLSRCSSLPFGSSSSSLGSSPSNFLSSSPSIQSFGSQFGPDHFNSFLSDSNGSTWTWNRASESAIRGNAGVLGGEKGSATVVLLGWLGSKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRRVEQRISDLAVELISWLSDGEESDKDRSLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSTSPVVNGEKVDKKPLLMETLVLSTLEKFFSVALKLPDVDKRLKKIVSVLTENQPLYPELYLYSSGDKVVPFESIELLIEKRKKTGRKNRPISAKMNDLMTKSFLSYVELKKQAQRDAGGVFDIESGGQEFNPTEEQNLSLFFEQVEEIKTQMEETTNLLIDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNADNRLISVAYGEGTAVDRTRTSITNGLRVKLREMMNEFQSLREKVVADHKEDLRRRYFSANGEQPSEEQMEKFMSGSLKLESFGGKVSEDELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESQGEKMEDIEENVAKGGRFINGGTRSLYYANQMKRKNKKWVYWVWAVIFVILLVCVVAMLVC 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74930080 74934548 - Tan0011635.1 Tan03g1990 747494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g1990 675 SMART SynN_4 413 540 IPR006011 GO:0016020(InterPro)
Tan03g1990 675 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 415 546 - -
Tan03g1990 675 Pfam Eukaryotic protein of unknown function (DUF829) 143 368 IPR008547 -
Tan03g1990 675 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 587 643 IPR000727 -
Tan03g1990 675 FunFam Syntaxin 132 575 674 - -
Tan03g1990 675 PANTHER UNCHARACTERIZED 79 367 IPR008547 -
Tan03g1990 675 CDD SNARE_syntaxin1-like 587 640 - -
Tan03g1990 675 Gene3D - 583 674 - -
Tan03g1990 675 SMART tSNARE_6 576 643 IPR000727 -
Tan03g1990 675 SUPERFAMILY t-snare proteins 417 636 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan03g1990 675 CDD SynN 421 568 IPR006011 GO:0016020(InterPro)
Tan03g1990 675 Gene3D - 413 545 - -
Tan03g1990 675 Pfam Syntaxin 421 616 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1990 Tan-Chr3:74930080 Tan11g1502 Tan-Chr11:13819788 1.60E-54 dispersed
Tan03g1990 Tan-Chr3:74930080 Tan08g1616 Tan-Chr8:65581678 8.30E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g1990 K08486 - csv:101222646 573.548