Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2039 ATGGCAGCAGCAGAGGGACGAGTCATCCGCTGTAACACCATTGATTCATGGAAGCACCAAATTCAGAAGGGCAATGCCTCCCAGGAACTGATAGTTGTGGATTTCACTGCATCATGGTGCGGTCCATGTCGGTTCATTGGACCTTTTCTAGACGAGCTTGCTCAGAAATTTCCTAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTTGAGTCTGTAGCTAAAGATTGGGGTGTAGAGGCAATGCCTACTTTCATGTTCCTGAAAGAGGGAAGAATTGTGGACAAAGTGGTGGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTGTTCAAGCACATGGCTGCTACTGCTTCTGCCTGA 360 47.5 MAAAEGRVIRCNTIDSWKHQIQKGNASQELIVVDFTASWCGPCRFIGPFLDELAQKFPSVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATASA 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75369135 75370554 - Tan0010349.1 Tan03g2039 747543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2039 119 PANTHER THIOREDOXIN 5 112 IPR050620 -
Tan03g2039 119 FunFam Thioredoxin 7 114 - -
Tan03g2039 119 SUPERFAMILY Thioredoxin-like 6 114 IPR036249 -
Tan03g2039 119 CDD TRX_family 26 109 - -
Tan03g2039 119 Gene3D Glutaredoxin 1 118 - -
Tan03g2039 119 PRINTS Thioredoxin family signature 31 39 - -
Tan03g2039 119 PRINTS Thioredoxin family signature 78 89 - -
Tan03g2039 119 PRINTS Thioredoxin family signature 39 48 - -
Tan03g2039 119 ProSiteProfiles Thioredoxin domain profile. 1 114 IPR013766 -
Tan03g2039 119 Pfam Thioredoxin 13 109 IPR013766 -
Tan03g2039 119 ProSitePatterns Thioredoxin family active site. 32 50 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2039 K03671 - - csv:101203181 203.371
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2017 Tan-Chr2:89364749 Tan03g2039 Tan-Chr3:75369135 9.10E-22 dispersed
Tan02g2018 Tan-Chr2:89364749 Tan03g2039 Tan-Chr3:75369135 4.70E-13 dispersed
Tan03g0700 Tan-Chr3:62532679 Tan03g2039 Tan-Chr3:75369135 3.50E-25 dispersed
Tan03g2039 Tan-Chr3:75369135 Tan04g0228 Tan-Chr4:1750074 4.70E-31 dispersed
Tan01g4971 Tan-Chr1:115506903 Tan03g2039 Tan-Chr3:75369135 3.00E-35 wgd
Tan02g2016 Tan-Chr2:89329694 Tan03g2039 Tan-Chr3:75369135 2.60E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34