Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2042 ATGTCTGGCTTTTTTACTTTAGGGGGAGGAGGAGGAGGAGGAAACCAAGACCAAGAAGACCAACAACACAACACAAACCGACCCAACGAAATTGTTCATCCGGACAGCTTGTTTTGGTACAAGGGCAACGTCGAGCTATGGCAGCAACAGCAACAGCAACAAGAACAAGCACTCTTTCAAACCCAATCCCGGTCTCATCACCACCACCACCACAACAACAACAACCCTTACTCGTCCCCTCTAGGCGGCGGTCCACGGCGGAGCAGCGATGAATCGTCGTCCAGATCGGGTAATTTCATGATGATTAGCTCCGGATCAGGTGGGAGTGGTGGAATCAGCTGCCAAGACTGCGGAAACCAAGCGAAGAAAGATTGTAGCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGGTTCGCTTGCCAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGGGAGCGCCAAGATAAACTCGCCGCCTTACAAACCCACCACCACCAACAACTTCAACTCCATCCCGACACTACTAACAATCCCAAACGCCACAGAGATTATAACAATCCCACTTCCTCCTCTTCTCTTGCCTGCACTCTCATCCCCAACAACACTTCTGGGTTTGAAATTGGGAATTTCCCGACGGAGTTGAACTCACCGGCTGTGTTCCGTTGCGTTCGGGTGAGCTCCTCCGACGATACGGACGATCAATACGCGTATCAAACGGCGGTGAATATCGGAGGACATGTTTTCAAGGGAATTCTCTTCGATCAAGGACCGGAAAATAATTATAATCCGGGTGAGACCTCGTCCGGCGGTGGTGGGAGTAGTAGTGGAGTGCAACCACGGAATTTCATCCCCGGTGCCGCTGATGCCACCACCGCCAGTGCTGGTTCCTCCGTCGCATTACCTTTACTCGATCCGTCTTCCTTATATTCAACGCCGCTTAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA 1002 52.2 MSGFFTLGGGGGGGNQDQEDQQHNTNRPNEIVHPDSLFWYKGNVELWQQQQQQQEQALFQTQSRSHHHHHHNNNNPYSSPLGGGPRRSSDESSSRSGNFMMISSGSGGSGGISCQDCGNQAKKDCSHMRCRTCCKSRGFACQTHVKSTWVPAAKRRERQDKLAALQTHHHQQLQLHPDTTNNPKRHRDYNNPTSSSSLACTLIPNNTSGFEIGNFPTELNSPAVFRCVRVSSSDDTDDQYAYQTAVNIGGHVFKGILFDQGPENNYNPGETSSGGGGSSSGVQPRNFIPGAADATTASAGSSVALPLLDPSSLYSTPLNSFMAGTQFFPPPRS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75397357 75399616 - Tan0015353.1 Tan03g2042 747546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2042 333 MobiDBLite consensus disorder prediction 264 285 - -
Tan03g2042 333 MobiDBLite consensus disorder prediction 167 194 - -
Tan03g2042 333 MobiDBLite consensus disorder prediction 1 31 - -
Tan03g2042 333 MobiDBLite consensus disorder prediction 15 31 - -
Tan03g2042 333 NCBIfam LRP1 C-terminal domain 215 262 IPR006511 -
Tan03g2042 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 327 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Tan03g2042 333 MobiDBLite consensus disorder prediction 74 111 - -
Tan03g2042 333 MobiDBLite consensus disorder prediction 261 293 - -
Tan03g2042 333 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Tan03g2042 333 MobiDBLite consensus disorder prediction 51 111 - -
Tan03g2042 333 Pfam Domain of unknown function (DUF702) 111 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2042 Tan-Chr3:75397357 Tan07g0788 Tan-Chr7:12643802 7.50E-34 dispersed
Tan01g4976 Tan-Chr1:115557683 Tan03g2042 Tan-Chr3:75397357 8.60E-53 wgd
Tan01g1268 Tan-Chr1:12325409 Tan03g2042 Tan-Chr3:75397357 7.70E-53 wgd
Tan02g2029 Tan-Chr2:89611945 Tan03g2042 Tan-Chr3:75397357 3.00E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27056 PF05142 DUF702 7.50E-66 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2042 K27807 - csv:101207689 457.603