Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2047 ATGGAATTCTCTCTTCAACTCAACACCATCTCTCTCTACTTCTTCTTCCTCTTTCTATCTTATTCTCTCTTCCTTTCGCCCTCTAATTCCTGCCATCCCACTGACAAAGAAGCACTTCTCGAGTTCAAACTCAAAATCACTTCTGACCCTTCACAGCTACTGCTTTCATGGAAATCCGCCACCGACTGCTGCTCCTCCTGGGACGGCGTCGCCTGCGATTCCTCCGGCAGAGTCATCAACCTTACCCGACCTGGAATTGTCTCCGGCAACGACTTCATCGCCGACACTTACATGTCTGGATCTCTCTCTCCTTTTCTCGGAAACTTGTCCTCGCTTCAATTTCTCGACCTCAGCAGTCTCAAAGACATTAAGGGTCGAATTCCATTGGAATTTGGCAAGTTATCTCGACTCACCCATTTGTTCCTCGATTCAAATAAACTCATGGGTTCCATTCCCAGAACTTTTGGGTGTCTTTTTCGGTTGGAAAAACTCTATCTTGGCAACAATCAGCTCTCTGGAATTATCCCTCCTTCCATTTTTGAGCATTTCAAGTGCCTTGTAGAACTGGGTCTTTCCGGAAATAGACTATCTGGGTCGATTCCCATTTCAATTGGGAAGCTAATTGAGCTAAAAAATCTCGATCTCCATGCCAACAATTTCTCTGGAAGCATTCCTAGGAGTATCGGTAACCTTAAAAGTCTCAGATATCTCGATTTTTCTGAAAATGAGATAACAGGGAGCATTCCAAAATCGATTGGTGGACTCTCTGAGTTAGTCTTGCTGTACCTTAATCAGAACAAGATTACTGGAAGTATCCCCTCTTCAGTATCCGGACTTAGTTCTCTAATATTCTGCCGTTTGTCGGAAAACCGAATAAGTGGTCGGCTACCGGCGTCTGTCGGTAAGCTTGCAAAGATCCAGAGGCTGATTCTTGAGAACAACAAGCTTACTGGGAAATTGCCTTCCTCCATTGGCCGTTTGACCACTTTAACTGACTTGTTCTTCTCTAACAACCTTTTTACTGGCAAAATTCCCAAGACTTTTGGCAATTTGGAAAACCTCCAAACTCTGGACTTGTCGAGAAATTTGCTTTCTGGTGGAATTCCCCATCAGTTATCAAAATTACAGAGATTACAGAGCTTGGATCTTTCGTTTAATCCTCTTGGTTTGCGATCCATACCAAATTGGTTTGCAAAGATGAAACTTTTCAGGCTGTTTTTGGCCAAAACTGGAATTGAAGGGCAGCTTCCAAAATGGTTGTCTTCATCTACAATATCCGTCCTTGATTTGTCGATGAATCGATTAACAGGGCCGTTGCCCCATTGGATTGGGAATATGACCAATCTTTCATTCCTAAACCTTTCAAACAACGGATTTCATTCGTCAATCCCAGCTGAATTCAAAAACCTTTTACTATTAATGGATCTTGATCTTCGTTCCAACCACTTTACAGGGTGCCTTGACAACCTATTTTCAAAAGGAGTTCAAGACCCACTTGGCCATTTCAATTCCATTGATGTTTCTCACAACCATTTCAGTGGTTGTATTGATGAGAATATTGGAAACTGGGCAGCAATGTCTTCAATCAAATCACTTATTTTATCCAACAATGAACTGGAAGGGCAAATCCCCAAGTCGTTGTCGGAACTCAGTGAGTTACAGGTGCTGGAGATGGCCGGAAACCAGCTTTCCGGTGAAATACCAGCGGAGCTCGGAGATGCGGCGGAGCTGACTACGATTTTGCTTTCGAAGAACAAGCTGTGTGGGCCGATTCCAGCACAGGTGTTGAATTTGCAGAAGCTATGGAAATTCGACGTGTCGGAAAATAGACTTTGTGGAAAAATTCCGCCGCATAAAGCTCATTTCCCTGCCTCTGCATTCAAGAATAATCGCGGACTCTGTGGAGCTCCACTTCCTTCCTGCAAGCATTCTTAG 1935 43.77 MEFSLQLNTISLYFFFLFLSYSLFLSPSNSCHPTDKEALLEFKLKITSDPSQLLLSWKSATDCCSSWDGVACDSSGRVINLTRPGIVSGNDFIADTYMSGSLSPFLGNLSSLQFLDLSSLKDIKGRIPLEFGKLSRLTHLFLDSNKLMGSIPRTFGCLFRLEKLYLGNNQLSGIIPPSIFEHFKCLVELGLSGNRLSGSIPISIGKLIELKNLDLHANNFSGSIPRSIGNLKSLRYLDFSENEITGSIPKSIGGLSELVLLYLNQNKITGSIPSSVSGLSSLIFCRLSENRISGRLPASVGKLAKIQRLILENNKLTGKLPSSIGRLTTLTDLFFSNNLFTGKIPKTFGNLENLQTLDLSRNLLSGGIPHQLSKLQRLQSLDLSFNPLGLRSIPNWFAKMKLFRLFLAKTGIEGQLPKWLSSSTISVLDLSMNRLTGPLPHWIGNMTNLSFLNLSNNGFHSSIPAEFKNLLLLMDLDLRSNHFTGCLDNLFSKGVQDPLGHFNSIDVSHNHFSGCIDENIGNWAAMSSIKSLILSNNELEGQIPKSLSELSELQVLEMAGNQLSGEIPAELGDAAELTTILLSKNKLCGPIPAQVLNLQKLWKFDVSENRLCGKIPPHKAHFPASAFKNNRGLCGAPLPSCKHS 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75429591 75431547 + Tan0008120.1 Tan03g2047 747551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2047 644 Gene3D Ribonuclease Inhibitor 28 89 IPR032675 -
Tan03g2047 644 Gene3D Ribonuclease Inhibitor 90 389 IPR032675 -
Tan03g2047 644 Gene3D Ribonuclease Inhibitor 390 644 IPR032675 -
Tan03g2047 644 Pfam Leucine Rich Repeat 448 470 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 Pfam Leucine Rich Repeat 306 327 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 Pfam Leucine Rich Repeat 553 572 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 Pfam Leucine Rich Repeat 426 446 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 367 644 - -
Tan03g2047 644 SMART LRR_sd22_2 158 185 - -
Tan03g2047 644 SMART LRR_sd22_2 375 395 - -
Tan03g2047 644 SMART LRR_sd22_2 526 552 - -
Tan03g2047 644 SMART LRR_sd22_2 327 353 - -
Tan03g2047 644 SMART LRR_sd22_2 231 252 - -
Tan03g2047 644 SMART LRR_sd22_2 255 281 - -
Tan03g2047 644 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 103 200 - -
Tan03g2047 644 Pfam Leucine rich repeat 329 388 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 Pfam Leucine rich repeat 135 196 IPR001611 GO:0005515(InterPro)
Tan03g2047 644 PANTHER OS01G0750400 PROTEIN 97 261 IPR053038 -
Tan03g2047 644 SUPERFAMILY RNI-like 99 486 - -
Tan03g2047 644 SUPERFAMILY L domain-like 394 639 - -
Tan03g2047 644 FunFam Piriformospora indica-insensitive protein 2 201 298 - -
Tan03g2047 644 SMART LRR_typ_2 375 399 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 207 231 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 303 327 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 255 279 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 470 493 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 446 469 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 134 157 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 598 629 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 351 374 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 550 574 IPR003591 -
Tan03g2047 644 SMART LRR_typ_2 158 182 IPR003591 -
Tan03g2047 644 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2047 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2047 Tan-Chr3:75429591 Tan03g2669 Tan-Chr3:79738680 1.70E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31