Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2048 ATGGGTCGTCTCATCAAGGAGATGGGTTTCAAGTCCAGCCCCAAGCTTTATTTGGACGACTTTTGGCCTTCCAATTCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTGGACCAACTCCTCAACTTTTCAAATGAAGAAGATGGGTTTATTGAAGAAGAACAGGCAGAAGGTGAAAAAAGAAACCACTCCTCTGTTTCGCCTCCCCTGCAACTTCAACAACAACACGAGAGCGACGAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGCTTTCTGGCCTGTTAATTCAATAGATTTTGAAGACCTCGAATGGATCTCCCATATCGTCGAAGATTCCACCCAAGAAGAATACTCTGCCGCCGTACCCTGCTCTGTTTTTTTAACAGAGAAACCCAGTAATAACCAAAAGGAAACAATCCAGAAATTTGGGTCTAATCTCAAGACCCCATTTCCCTCGAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGACGAAGAAGCCAAAGAAGAATTCGGCGGTGGAAGGCTTCGGCAGAGTCCAGCCGCCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCCGGTCCGCTGGGAACAAAGACGCTGTGTAATGCGTGCGGCGTCCGGTTTAAATCTGGCCGGCTTTTCCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAATTGAAATTCACTCGAATCATCACCGGAAAGTACTGGAGATGCGACGAAAAAAGGAAACGGAGAAATCCCATTCCGGTCCGCACCCGACCGTAGTCGTAAAATAG 870 48.97 MGRLIKEMGFKSSPKLYLDDFWPSNSQNAASPSSDYIFVDQLLNFSNEEDGFIEEEQAEGEKRNHSSVSPPLQLQQQHESDENSNHSSTNSSEDAFWPVNSIDFEDLEWISHIVEDSTQEEYSAAVPCSVFLTEKPSNNQKETIQKFGSNLKTPFPSKPRSKRAKISGRVWSLTNSISSPSLYSPPTKKPKKNSAVEGFGRVQPPRRCSHCGVQKTPQWRAGPLGTKTLCNACGVRFKSGRLFPEYRPACSPTFSIEIHSNHHRKVLEMRRKKETEKSHSGPHPTVVVK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75440332 75441637 + Tan0007244.1 Tan03g2048 747552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2048 289 CDD ZnF_GATA 207 255 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 FunFam GATA transcription factor 200 282 - -
Tan03g2048 289 ProSitePatterns GATA-type zinc finger domain. 208 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 MobiDBLite consensus disorder prediction 49 95 - -
Tan03g2048 289 SMART GATA_3 202 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 264 - -
Tan03g2048 289 Pfam GATA zinc finger 208 241 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 MobiDBLite consensus disorder prediction 64 95 - -
Tan03g2048 289 ProSiteProfiles GATA-type zinc finger domain profile. 202 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 PIRSF Txn_fac_GATA_plant 11 285 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan03g2048 289 PANTHER GATA TRANSCRIPTION FACTOR 39 274 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan03g2048 289 Gene3D - 200 280 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2048 Tan-Chr3:75440332 Tan06g0259 Tan-Chr6:2097840 9.40E-33 dispersed
Tan01g1282 Tan-Chr1:12543747 Tan03g2048 Tan-Chr3:75440332 6.00E-51 transposed
Tan03g2048 Tan-Chr3:75440332 Tan05g1236 Tan-Chr5:12837964 2.70E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2340 . 6 262 C2C2-Gata Transcription Factor Family AT3G24050 51.3 5.4e-54 208.8
Tan02g2548 . 76 369 C2C2-Gata Transcription Factor Family AT5G25830 52.6 7.9e-68 255.0
Tan01g3930 . 39 345 C2C2-Gata Transcription Factor Family AT5G25830 50.9 9.6e-66 248.1
Tan04g2676 . 96 271 C2C2-Gata Transcription Factor Family AT3G60530 50.5 4.4e-44 175.6
Tan01g1282 . 69 379 C2C2-Gata Transcription Factor Family AT5G66320 50.3 1.1e-67 254.6
Tan01g1282 . 105 379 C2C2-Gata Transcription Factor Family AT3G51080 52.3 5.0e-56 215.7
Tan03g2048 . 103 273 C2C2-Gata Transcription Factor Family AT4G36240 51.4 6.5e-40 161.8
Tan07g1894 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.7 8.0e-136 481.5
Tan01g2093 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.1 1.0e-135 481.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27057 PF00320 GATA 1.50E-16 CL0167 Tan TF