Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2048 ATGGGTCGTCTCATCAAGGAGATGGGTTTCAAGTCCAGCCCCAAGCTTTATTTGGACGACTTTTGGCCTTCCAATTCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTGGACCAACTCCTCAACTTTTCAAATGAAGAAGATGGGTTTATTGAAGAAGAACAGGCAGAAGGTGAAAAAAGAAACCACTCCTCTGTTTCGCCTCCCCTGCAACTTCAACAACAACACGAGAGCGACGAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGCTTTCTGGCCTGTTAATTCAATAGATTTTGAAGACCTCGAATGGATCTCCCATATCGTCGAAGATTCCACCCAAGAAGAATACTCTGCCGCCGTACCCTGCTCTGTTTTTTTAACAGAGAAACCCAGTAATAACCAAAAGGAAACAATCCAGAAATTTGGGTCTAATCTCAAGACCCCATTTCCCTCGAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGACGAAGAAGCCAAAGAAGAATTCGGCGGTGGAAGGCTTCGGCAGAGTCCAGCCGCCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCCGGTCCGCTGGGAACAAAGACGCTGTGTAATGCGTGCGGCGTCCGGTTTAAATCTGGCCGGCTTTTCCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAATTGAAATTCACTCGAATCATCACCGGAAAGTACTGGAGATGCGACGAAAAAAGGAAACGGAGAAATCCCATTCCGGTCCGCACCCGACCGTAGTCGTAAAATAG 870 48.97 MGRLIKEMGFKSSPKLYLDDFWPSNSQNAASPSSDYIFVDQLLNFSNEEDGFIEEEQAEGEKRNHSSVSPPLQLQQQHESDENSNHSSTNSSEDAFWPVNSIDFEDLEWISHIVEDSTQEEYSAAVPCSVFLTEKPSNNQKETIQKFGSNLKTPFPSKPRSKRAKISGRVWSLTNSISSPSLYSPPTKKPKKNSAVEGFGRVQPPRRCSHCGVQKTPQWRAGPLGTKTLCNACGVRFKSGRLFPEYRPACSPTFSIEIHSNHHRKVLEMRRKKETEKSHSGPHPTVVVK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75440332 75441637 + Tan0007244.1 Tan03g2048 747552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2048 289 CDD ZnF_GATA 207 255 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 FunFam GATA transcription factor 200 282 - -
Tan03g2048 289 ProSitePatterns GATA-type zinc finger domain. 208 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 MobiDBLite consensus disorder prediction 49 95 - -
Tan03g2048 289 SMART GATA_3 202 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 264 - -
Tan03g2048 289 Pfam GATA zinc finger 208 241 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 MobiDBLite consensus disorder prediction 64 95 - -
Tan03g2048 289 ProSiteProfiles GATA-type zinc finger domain profile. 202 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2048 289 PIRSF Txn_fac_GATA_plant 11 285 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Tan03g2048 289 PANTHER GATA TRANSCRIPTION FACTOR 39 274 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Tan03g2048 289 Gene3D - 200 280 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2048 Tan-Chr3:75440332 Tan06g0259 Tan-Chr6:2097840 9.40E-33 dispersed
Tan01g1282 Tan-Chr1:12543747 Tan03g2048 Tan-Chr3:75440332 6.00E-51 transposed
Tan03g2048 Tan-Chr3:75440332 Tan05g1236 Tan-Chr5:12837964 2.70E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27057 PF00320 GATA 1.50E-16 CL0167 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2048 - - - 0.0