Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2053 ATGAGGATACTTTGTGATTCCTGTGAAAGTGCTGCAGCAACTTTGTTCTGTGCTGCTGATGAGGCTGCTCTTTGTGTAGCATGTGATGCCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCGAGTGAAGTTTCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAAATAGATGGCAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGCAAAAGAATGCACAAGAGATATCTTCGGTTAAGGCAGAGAGTTGAGTTTCCTGGGGATAAACAAAATGATGCAAGGGATCTAAATGTACAAGCAATGGAACAGGTTGAGACAGTGAGAGAGCAAAATCAAGATGTGGTACAGGAAAACTTGAAGGTTTCAAGTGTTAGAGATTATTCAAAGGAAAATGGAGATGGGCATTCCAAGCGGGGTAACAAAGTGATTGATTTGAACATTTAG 498 42.77 MRILCDSCESAAATLFCAADEAALCVACDAKVHMCNKLASRHVRVGLANPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDARDLNVQAMEQVETVREQNQDVVQENLKVSSVRDYSKENGDGHSKRGNKVIDLNI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75499335 75500219 - Tan0016925.1 Tan03g2053 747557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2053 165 MobiDBLite consensus disorder prediction 143 165 - -
Tan03g2053 165 FunFam B-box zinc finger protein 19 2 92 - -
Tan03g2053 165 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 Gene3D Classic Zinc Finger 1 93 - -
Tan03g2053 165 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 139 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Tan03g2053 165 Coils Coil 115 135 - -
Tan03g2053 165 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 Pfam B-box zinc finger 4 41 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 CDD Bbox1_BBX-like 4 47 IPR049808 -
Tan03g2053 165 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 MobiDBLite consensus disorder prediction 143 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2053 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1213 Tan-Chr1:11814389 Tan03g2053 Tan-Chr3:75499335 3.10E-53 dispersed
Tan01g1214 Tan-Chr1:11814389 Tan03g2053 Tan-Chr3:75499335 2.30E-38 dispersed
Tan03g2053 Tan-Chr3:75499335 Tan06g1564 Tan-Chr6:24504335 3.70E-18 dispersed
Tan02g2035 Tan-Chr2:89736909 Tan03g2053 Tan-Chr3:75499335 2.60E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2785 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 6.6e-84 308.5
Tan09g1648 . 20 366 C2C2-CO-like Transcription Factor Family AT5G24930 51.5 4.9e-55 212.6
Tan09g1648 . 5 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.8 7.4e-64 241.9
Tan02g2785 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.7 1.5e-53 207.6
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT3G07650 57.1 1.5e-91 334.0
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 54.8 4.5e-88 322.4
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT5G48250 57.7 3.1e-89 326.2
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 3.6e-85 312.8
Tan05g0997 . 1 388 C2C2-CO-like Transcription Factor Family AT5G48250 57.7 3.1e-89 326.2
Tan02g0515 . 1 412 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 3.6e-85 312.8
Tan02g0764 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.0 3.6e-52 203.0
Tan05g1250 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 52.1 1.4e-48 191.0
Tan01g0919 . 1 296 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 8.1e-78 288.1
Tan01g1213 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.6e-56 215.3
Tan03g2053 . 1 120 C2C2-CO-like Transcription Factor Family AT2G21320 75.0 1.5e-49 193.4
Tan01g1214 . 2 152 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 4.0e-39 158.7
Tan01g1213 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.2e-57 220.3
Tan03g2053 . 1 113 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 1.0e-48 190.7
Tan01g1214 . 1 153 C2C2-CO-like Transcription Factor Family AT4G38960 58.2 8.6e-40 161.0
Tan02g0764 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.4 1.6e-54 210.3
Tan02g2035 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 3.6e-46 182.6
Tan05g1250 . 1 209 C2C2-CO-like Transcription Factor Family AT4G39070 53.0 4.0e-45 179.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27058 PF00643 zf-B_box 5.60E-06 No_clan Tan TF