Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2053 ATGAGGATACTTTGTGATTCCTGTGAAAGTGCTGCAGCAACTTTGTTCTGTGCTGCTGATGAGGCTGCTCTTTGTGTAGCATGTGATGCCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCGAGTGAAGTTTCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAAATAGATGGCAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGCAAAAGAATGCACAAGAGATATCTTCGGTTAAGGCAGAGAGTTGAGTTTCCTGGGGATAAACAAAATGATGCAAGGGATCTAAATGTACAAGCAATGGAACAGGTTGAGACAGTGAGAGAGCAAAATCAAGATGTGGTACAGGAAAACTTGAAGGTTTCAAGTGTTAGAGATTATTCAAAGGAAAATGGAGATGGGCATTCCAAGCGGGGTAACAAAGTGATTGATTTGAACATTTAG 498 42.77 MRILCDSCESAAATLFCAADEAALCVACDAKVHMCNKLASRHVRVGLANPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDARDLNVQAMEQVETVREQNQDVVQENLKVSSVRDYSKENGDGHSKRGNKVIDLNI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75499335 75500219 - Tan0016925.1 Tan03g2053 747557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2053 165 MobiDBLite consensus disorder prediction 143 165 - -
Tan03g2053 165 FunFam B-box zinc finger protein 19 2 92 - -
Tan03g2053 165 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 Gene3D Classic Zinc Finger 1 93 - -
Tan03g2053 165 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 139 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Tan03g2053 165 Coils Coil 115 135 - -
Tan03g2053 165 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 Pfam B-box zinc finger 4 41 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 CDD Bbox1_BBX-like 4 47 IPR049808 -
Tan03g2053 165 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Tan03g2053 165 MobiDBLite consensus disorder prediction 143 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1213 Tan-Chr1:11814389 Tan03g2053 Tan-Chr3:75499335 3.10E-53 dispersed
Tan01g1214 Tan-Chr1:11814389 Tan03g2053 Tan-Chr3:75499335 2.30E-38 dispersed
Tan03g2053 Tan-Chr3:75499335 Tan06g1564 Tan-Chr6:24504335 3.70E-18 dispersed
Tan02g2035 Tan-Chr2:89736909 Tan03g2053 Tan-Chr3:75499335 2.60E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27058 PF00643 zf-B_box 5.60E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2053 - - - 0.0