Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2083 ATGGAGCAGTGGAAGACTGGAGATTTCTCTCAATCTATTGTAACAGCTGATTTAGTTCCTTCCTCGTCTCTTCCGCCTCAGCCTCTCTCTTTGCCCTCCAGTCGCCACCATAACAACCAGCTTCCTGAATCCAGGTTAAGAACAGATACGGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCTGATCGTGAAAAGTTGAGGAGAGACAGGCTGAATGAACACTTTCTCGAGCTAGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTCACAGACACCATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTGAAGGCTGACTACGAAGCTCTTTCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGACTGAGGGTAATGTTTCCCTGGGCTACAATGGATCCTTCGGTGGTCATGGGGCCCCCATATTCATACCCAGTTCCTGTTCCCGTTCCCCCAGGACCAATTCCAATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCCGGTGCTATTCCTAACCCTTGTTCAACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATTGAACAGCCCTCTGCCCAATATGCTTCCAATTCACATATCTCTAGCAAACAAGATTCCAGAAGTAAGTCGTCGGATCAGCATAGGCGTAGTAATGCGGAAAGATGCGACGAATCTAATGATGTAGCAACGGACCTTGAACTCAAGATGCCGGGATCTTCAACACAACAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCGCAGAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGCGTTGGCGACATCCCGAAACAGAACAACTAA 1005 44.78 MEQWKTGDFSQSIVTADLVPSSSLPPQPLSLPSSRHHNNQLPESRLRTDTEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIEQPSAQYASNSHISSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQRKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75709675 75713232 - Tan0006972.1 Tan03g2083 747587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2083 334 PANTHER TRANSCRIPTION FACTOR BHLH121 24 332 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Tan03g2083 334 MobiDBLite consensus disorder prediction 246 271 - -
Tan03g2083 334 MobiDBLite consensus disorder prediction 17 47 - -
Tan03g2083 334 Gene3D - 57 141 IPR036638 GO:0046983(InterPro)
Tan03g2083 334 SMART finulus 64 114 IPR011598 GO:0046983(InterPro)
Tan03g2083 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 128 IPR036638 GO:0046983(InterPro)
Tan03g2083 334 MobiDBLite consensus disorder prediction 276 291 - -
Tan03g2083 334 MobiDBLite consensus disorder prediction 306 334 - -
Tan03g2083 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 108 IPR011598 GO:0046983(InterPro)
Tan03g2083 334 Coils Coil 98 153 - -
Tan03g2083 334 CDD bHLH_AtILR3_like 63 137 - -
Tan03g2083 334 Pfam Helix-loop-helix DNA-binding domain 59 109 IPR011598 GO:0046983(InterPro)
Tan03g2083 334 MobiDBLite consensus disorder prediction 233 334 - -
Tan03g2083 334 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2083 Tan-Chr3:75709675 Tan05g1193 Tan-Chr5:11789296 6.10E-36 dispersed
Tan03g2083 Tan-Chr3:75709675 Tan03g2084 Tan-Chr3:75709675 6.60E-131 tandem
Tan03g2083 Tan-Chr3:75709675 Tan05g1191 Tan-Chr5:11789296 1.40E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27062 PF00010 HLH 6.40E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2083 - - - 0.0