Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2103 ATGGGTCTCTTGGATCGTTGCGGTGATGTCTGCAACTTCTCTCACGGTCACAGCCGCCATGACAGTAAGAAGCTCAAGAAAAACCAGCAACTTCGGACGGTGGAGATAAAAGTGAAGATGGATTGTGAAGGGTGCGAGAAAAAAGTGAAGAAATCCGTAGAGGGAATGAAAGGAGTGACGGAGGTGGAGGTGGAGCCGAAGCGGAGCAAGCTCACGGTGGTGGGTTATGTCGATCCCAACAAGGTTCTGCAGCGGGTCCGCCGCCGGACGGGGAAGACGGCGGAGCTCTGGCCGTATGTCCCGTACGACGTCGTTGAACACCCATACGCGCCCGGAGCCTACGACAAGAAGGCTCCGCCAGGATACGTGCGGAATGTAACGGCTAACCCGGAGGCCGCGCCGCTCGCACGTGCCGGCTCCTTCGAGGTTAAATACACCACCGCATTCAGCGATGAAAATCCTAATGCTTGCGCTCTAATGTAA 483 56.11 MGLLDRCGDVCNFSHGHSRHDSKKLKKNQQLRTVEIKVKMDCEGCEKKVKKSVEGMKGVTEVEVEPKRSKLTVVGYVDPNKVLQRVRRRTGKTAELWPYVPYDVVEHPYAPGAYDKKAPPGYVRNVTANPEAAPLARAGSFEVKYTTAFSDENPNACALM 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75893251 75894952 - Tan0018260.1 Tan03g2103 747607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2103 160 FunFam Heavy metal-associated isoprenylated plant protein 26 19 97 - -
Tan03g2103 160 ProSiteProfiles Heavy-metal-associated domain profile. 31 95 IPR006121 GO:0046872(InterPro)
Tan03g2103 160 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 31 160 IPR045181 GO:0046872(InterPro)
Tan03g2103 160 Pfam Heavy-metal-associated domain 37 92 IPR006121 GO:0046872(InterPro)
Tan03g2103 160 Gene3D - 30 102 - -
Tan03g2103 160 CDD HMA 35 95 IPR006121 GO:0046872(InterPro)
Tan03g2103 160 SUPERFAMILY HMA, heavy metal-associated domain 32 98 IPR036163 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2103 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0681 Tan-Chr2:6389774 Tan03g2103 Tan-Chr3:75893251 1.50E-50 dispersed
Tan03g2103 Tan-Chr3:75893251 Tan11g1794 Tan-Chr11:19423804 2.70E-37 dispersed
Tan03g2103 Tan-Chr3:75893251 Tan05g2489 Tan-Chr5:76174368 1.30E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1161 . Blo16g00092 . . . . . . . . . . . . Sed14g1206 . . Bhi03g00834 Tan03g2103 Cmetu11g1017 . Hepe04g1611 . . . . . . . . . . Cone12ag0829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013554 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 26