Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2123 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGTTGCCGTCCTCGGACAACATCATACACAGCGGTTCAGATTCCGCAGGCCGTCATGAAGGCTTACTATGGTACAAAGATATTGGACAGCATATGAATGGTGAATTTTCAATGGCTGTCGTTCAGGCCAATAACTTGCTCGAGGATCAGAGCCAGATTGAATCTGGTTCGTTGAGCTTGCATGAATCCGGGCCATATGGAACCTTTATTGGTGTCTATGATGGTCATGGTGGCCCCGAAGCATCAAATTACGTATATGATAATCTTTTCCAGCATCTGAAAAGGTTCACCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTTATTTCTCTAGTCACCAAACAGTGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTGCTGGGAAGGCTCGTTCGGGCAACCGAGGAGGTTATTGCCGTTCAGCTATCAGCAGAGCATAATGTGAGCATAGAAGCTGTCAGAAGCGAGATGCATTCTCTGCACCCAGATGATTCACATATTGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCAATCGGTGATGCATATCTAAAGAAGGCTGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGCGAACCGTTCACTCGGCCAATATTGAGCTGTGAACCATCAATTTCGGTGCATGAACTTCAACCACATGATCAATTCATCATATTTGCCTCTGATGGTCTGTGGGAGCACCTTAGCAACCAGCAGGCTGTGGATATTATTCGAAACCACCCTCATAATGGGAGTGCTAAGAGGTTGGTAAAAGCTGCTATGCAGGAAGCAGCTAAGAAACGCGAAATGCGATATTCAGATTTGAAGGAAATCGACCGTGGTGTCCGCCGCCATTTTCACGATGACATCACAGTCATAGTTGTATTTCTTGACTCAAATCTCGTGAGCAGAGCGAGCTCGGTTGGAGGCCCAACTACATCCTTGAGAGGGAGTGGCGTTATCTTACCAACAAAATCTCTAGCTCCTTGTGCCACACCTGCAGAACTTAACACAATCTGA 1194 45.9 MLSSLMNFLRACWLPSSDNIIHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLHESGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVRATEEVIAVQLSAEHNVSIEAVRSEMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLYAKFRLREPFTRPILSCEPSISVHELQPHDQFIIFASDGLWEHLSNQQAVDIIRNHPHNGSAKRLVKAAMQEAAKKREMRYSDLKEIDRGVRRHFHDDITVIVVFLDSNLVSRASSVGGPTTSLRGSGVILPTKSLAPCATPAELNTI 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76028766 76032220 + Tan0016388.1 Tan03g2123 747627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2123 397 Gene3D - 37 364 IPR036457 -
Tan03g2123 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Tan03g2123 397 FunFam Phosphatase 2C family protein 36 365 - -
Tan03g2123 397 Pfam Protein phosphatase 2C 79 324 IPR001932 -
Tan03g2123 397 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan03g2123 397 CDD PP2Cc 48 355 IPR001932 -
Tan03g2123 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Tan03g2123 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Tan03g2123 397 SMART PP2C_4 41 353 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2339 Tan-Chr1:28243762 Tan03g2123 Tan-Chr3:76028766 1.70E-173 dispersed
Tan01g2340 Tan-Chr1:28243762 Tan03g2123 Tan-Chr3:76028766 1.80E-141 dispersed
Tan03g2123 Tan-Chr3:76028766 Tan03g2125 Tan-Chr3:76028766 1.60E-229 dispersed
Tan03g2123 Tan-Chr3:76028766 Tan03g2124 Tan-Chr3:76028766 1.60E-229 tandem
Tan01g2338 Tan-Chr1:28243199 Tan03g2123 Tan-Chr3:76028766 1.70E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2123 K01102 - csv:101219696 741.88