Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2133 ATGAGTTCTTGTATATTTCGAGACGACAGCTTGCTGCCGGGGCTCGCCGCTGCAGAACAATCAATTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAGACCGTTCCGGGACTGGTCATCCTCTATGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCTGCCGTGCTCGTCTGTTGGGTGTTGTGGGCACATCGTATGGCATTCGGCGACAAATTGTTCTGGCTCGTTGGTAGGCCCGGCATAGCGCTGTCTGAAAGTTACCTTCTTTCACCGTCTACACAAGGCTGTTTTCCAATGGCTGACTATGTGTTTTTCCAGTTCGCTTTCGCTGCCATTACTGTCGTGTTGCTCGCCGGGTCCTTGCTGGGAAGGATGAATTTTTGTGCCTGGATGCTTTTTGTTCCAATGTGGCTAACTCTTTGTTACACTGTTGGGGCTTTCTGTATATGGGGGGATGGGTTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTATGTCATTCATCTTTCTTCTGGGGTTGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCACGACACTCCCAGGACAGGCAGAACTTTCCACCAAACAACATACTGCACATGGTGGGTGGCGCAGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCGGGTCGGATTACATCGCTAGCCATTTTGAACACACATATCTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATTGTATACAAAAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATTATCACTGGCCTTGTCTGCATCACTCCTGGTGCAGGGCTTGTGGACACGATCGCAGCTGTGGTGATGGGCGTGCTCGCTGGTTTGGTGCCATGGTACACCATGATGGTGCTGCACAGGAGGCTGGCATTTCTTCAGTGTGTCGACGATACTCTGGGTGTCTTCCACACGCATGCTGTGGCTGGTTCCATGGGAGGACTCCTCACAGGTTTCTTTGCCAAACCCAACCTTCTGAGAATGATGTATCCAGATTCTCTATACGGTCCAGGATTCCTGTACGCCATCTCTGATAGAAAGCTCAAAGATGGTCTCAGACAAATTGGCATCCAGATCGCTGGAGCAGTGTTTATTACCCTTTGGAATGCCATCTTTACCAGTATTATCTGTTACCTGATAAGCCATATTGTTAGCTTAAGGATGAAAGAAGAGGACCTGGAGATTGGTGACGATGCCGCTCATGGAGAAGAACCCTATGCATTGTGGGGCGACGGAGAGAAGATGCCATCCTCATTTCGGGTGGGATTAGGAGAACCAGATTTTGCAGTAACTCTCGTTGCTGCTGCAGTCACTCCTCCAGCTCAGGAGTCTTGA 1449 50.66 MSSCIFRDDSLLPGLAAAEQSIPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHRMAFGDKLFWLVGRPGIALSESYLLSPSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFCAWMLFVPMWLTLCYTVGAFCIWGDGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSQDRQNFPPNNILHMVGGAGFLWLGWTGFNGGAPFAAGRITSLAILNTHICTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTIAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPNLLRMMYPDSLYGPGFLYAISDRKLKDGLRQIGIQIAGAVFITLWNAIFTSIICYLISHIVSLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRVGLGEPDFAVTLVAAAVTPPAQES 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76085926 76087638 - Tan0009663.1 Tan03g2133 747637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2133 482 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Tan03g2133 482 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Tan03g2133 482 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005886(InterPro)
Tan03g2133 482 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Tan03g2133 482 PANTHER AMMONIUM TRANSPORTER MEP2 22 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Tan03g2133 482 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan03g2133 482 NCBIfam ammonium transporter 30 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan03g2133 482 Gene3D Ammonium transporter AmtB like domains 12 447 IPR029020 -
Tan03g2133 482 SUPERFAMILY Ammonium transporter 25 426 - -
Tan03g2133 482 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2695 Tan-Chr2:95244050 Tan03g2133 Tan-Chr3:76085926 3.30E-149 dispersed
Tan03g2133 Tan-Chr3:76085926 Tan08g2179 Tan-Chr8:73515884 1.00E-145 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2133 K03320 - csv:101218977 884.019