Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2169 ATGGCGTTTTCCGATGAGAACAATCCCAACTTGATCAAACCCACTGGGTTTCTTCCAGGAGGAGGAGGGTTGGAGAAGAATGGGAGGGCTTTTGGCCAGGAGATTAGTAGAATTAATAATCGAAGAGCTCTTAATGACATTAATCAAAATTCTGTGGTGAATCAAGCCTACCCTTGTGTTGTCAACAAGAGAGTTCTCTCAGGAAAGCAAGAGATCTGTGAGAAGAAGCAGGTTGATCCATTTCACAGGCCGATTACGAGGAAGTTTGCTGCTCAAATTGCGAGTAGTCAACAACTTCATCAGCCACAAGAAAATAATAAGCTTAACTCATTTCTTACAAACTCAAATGCATTTGGGCATTCCATATTTGTAGACGAGGATTGCAAAACAGTAGAAAATGACCATCCAGTTCCCATGTTCTTGGAGAAACCAGAACCATCATTGCCTCAGGAAGCAAGCCAAATGGAGGAGGTTGAAATGGAGGATATTGCAGACGACAATGACAACCCAGTAATCAACATTGATGGTGTCGATTCCGAGAACCCGCTTGCCGTCGTCGATTACGTCGACGATCTCTACGCACACTACAGAAAGATAGAGAATTCAAGCTGTGTTGCTCCAAATTACATGACAAAGCAAATTGACATTAATGAGAAAATGAGAGCTATACTAATTGACTGGTTAATAGAAGTGCATGACAAGTTTGATCTCATGGGAGAAACATTGTTTCTCACTGTGAACCTGATAGACAGATTTTTGTCACAAAAAACAGTGGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTCTTGGCTTGCAAATATGAAGAAGTTTCTGTCCCTGTTGTGGGAGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAATTGGAGACAGTGATGCTAAACTGTTTGCAGTTTAATATGTCAGTTCCCACACCCTTTGTTTTCCTCCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTTGAGCTAATGGCATTCTTCTTGATCGAGCTCTCGCTCGTGGAGTATGAAATGCTGAGATTTCCGCCCTCTTTACTGGCGGCGGCGGCAACTTACACAGCTCAATGTACTCTCACCGGAGTCAAGGGGTGGAGCCGGACCTGCGAGTGGCATTCTAGCTACTCAGAAGATCAGCTCCTAGAATGCTCGAGACTGATGGTGGGGTTCCATCAGAAGGCGGCAACGGGGAAGCTCACCGGAGTTCATCGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAA 1335 43.15 MAFSDENNPNLIKPTGFLPGGGGLEKNGRAFGQEISRINNRRALNDINQNSVVNQAYPCVVNKRVLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHQPQENNKLNSFLTNSNAFGHSIFVDEDCKTVENDHPVPMFLEKPEPSLPQEASQMEEVEMEDIADDNDNPVINIDGVDSENPLAVVDYVDDLYAHYRKIENSSCVAPNYMTKQIDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLELETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTLTGVKGWSRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76288302 76291386 - Tan0014617.1 Tan03g2169 747673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2169 444 PANTHER CYCLINS 156 423 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan03g2169 444 PIRSF Cyclin_A_B_D_E 24 444 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan03g2169 444 Pfam Cyclin, N-terminal domain 191 317 IPR006671 -
Tan03g2169 444 FunFam G2/mitotic-specific cyclin-1 313 431 - -
Tan03g2169 444 FunFam G2/mitotic-specific cyclin 205 312 - -
Tan03g2169 444 ProSitePatterns Cyclins signature. 221 252 IPR048258 -
Tan03g2169 444 SUPERFAMILY Cyclin-like 318 436 IPR036915 -
Tan03g2169 444 CDD CYCLIN_AtCycB-like_rpt1 170 314 - -
Tan03g2169 444 SMART Cyclin_C_2 319 436 IPR004367 -
Tan03g2169 444 MobiDBLite consensus disorder prediction 1 24 - -
Tan03g2169 444 Gene3D - 191 431 - -
Tan03g2169 444 Gene3D - 205 317 - -
Tan03g2169 444 SUPERFAMILY Cyclin-like 180 316 IPR036915 -
Tan03g2169 444 SMART cyclin_7 323 405 IPR013763 -
Tan03g2169 444 SMART cyclin_7 226 310 IPR013763 -
Tan03g2169 444 Pfam Cyclin, C-terminal domain 319 435 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5103 Tan-Chr1:116409736 Tan03g2169 Tan-Chr3:76288302 2.10E-129 dispersed
Tan03g2169 Tan-Chr3:76288302 Tan05g0055 Tan-Chr5:582263 1.20E-66 dispersed
Tan03g2169 Tan-Chr3:76288302 Tan01g3680 Tan-Chr1:101634757 1.40E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2169 K21777 - csv:101216622 801.971