Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2176 ATGAAATTCGATTCAAGGGTCTTAAAGTGGCTAAGGCCATCGATCGTAATGGAGGGTGCGAGTGTGAATGTGCGCACTGCGCACAATGACAGTGCAATATTTGTAAGGCTAATTGCGGTTGGTCTTTTCATTCATTTATTACTTTTATGCTTTCTCCCTTTTGGGTTGGCTTCTAATGGCTCTAACGAGGTTATTGAATCTTTAAGTTTATGTAGCTTAATAGTGGGTTCTGTGAATTCCGTTCTAGTAAGTTTTTCCTCAATTGGTGATAGCACAAATATATCCACGAGACCTGATGTTGTCAACATTGGGGCCTTATTCTCTTTCCGTTCTATGATAGGCAGAGTTGGAAAAATTGCTGTAGAAGCTGCCGTCGAGGATGTAAATTCTGATCCATCCATTCTTGGGGGGACGAAGCTGAAGCTCACTTTACATGATACCAATTATAGTGGATTTTTGGGCATCATTGAGTCCTTGCGTTTCATGGAGACTGAGACTATGGCCATAATTGGCCCCCAAAACTCTGTAACTGCTCATGTAATATCTCATATTGCAAATGAGCTCCAAGTTCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCCCTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTCGACTACTTTCAATGGAGAGAGGTGATTGCCATCTTTGGTGATGATGACCATGGTAGAAATGGTATTGCAGCATTGGGGGATCAACTTAATGAGAAACGATGTAAGATCTCATTAAAAGTGCCATTGAAACCCGATGCAAGTCGGGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTAACTGAGTCTCGGATACTTGTTGTTCACACTTATGAGTCCACAGGTATGGTGGTGCTCAATGTGGCTCAGTATCTTGGATTGACAGGACCTGGGTATGTGTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTCCTGCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTGCGTCTTTATACCCCAGATTCTGCACTTAAAAGGAAATTTGTTTCAAGGTGGACCAATTTGACTTATGGAAAGTCAGCAAATGGTTCACTCGGATTGAGTACTTACGGATTATATGCTTATGATACTGTATGGATGCTTGCTCATGCAATAAATGCATTTCTTAATGAAGGTGGGAATCTTTCATTTTCAAATCTTTCCAAGTTATCTGGGACTGATGTTGGAACTTTGAATTTTAACTCTATGAGTGTCTTCAATGGTGGGAAGATGCTACTACACAAAATTTTAGACGTCAATTTTACTGGAATAACAGGCCCAGTTGAGTTCACTCCAGACAGGGACTTAATTCACCCTGCATTCGAAGTTATCAATATAATCGGCACAGGCGAAAGGAGAATTGGTTATTGGTCTAACTATTCTGGCTTGTCGATTGTGCCTCCTGAAACTCTTTACTTGAAACCACCTAATCGATCCAGTTTAAATCAAAAGCTATATGATGTGGTGTGGCCTGGACAAGCAACACAGAAGCCTCGTGGGTGGGCATTTCCAAACCGTGGAAGACACTTGAGAATTGGAGTCCCAAGACGAATCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCAGTGGCTACTGCATTGATATCTTCACTGCAGCAATCAACATGTTGCCTTATGCGGTCCCTTATAAGTTAATTCCTTTTGGGGATGGCCTTACTAACCCAAGTACAACCGAGCTTGTTCGTCTAATCACCACCGGGGTCTTCGATGCAGCGATAGGTGATATTGCAATTATCACAAACCGAACCAGGATGGCAGATTTTACACAACCATACATCGAGTCTGGCTTAGTAGTCATAGCCCCAGTCAAGAAGTTGAACTCTAATGCTTGGGCCTTTTTACGGCCGTTCACTCCAAAGATGTGGTGTATTACTGCTGTTTCTTTTCTTGTAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGGATAAATGATGATTTTCGTGGCCCTCCGAAGAGACAAGTTATTACTATTCTATGGTTCAGCTTCTCAACTCTCTTCTTTTCTCATCGGGAAAACACAGTCAGTACCCTTGGTCGTCTCGTGCTGCTCATATGGTTGTTTGTTGTTCTTATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTTCTGTCAAAGGGATTGAAACTTTGGTTTCAAACAATGACCCAATTGGCTACCAACAAGGTTCATTCACTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCGAGACTTGTTCCACTCCTCTCAACAGAACATTGTGTTAAGGCCTTGAAGGATGGCCCAAAGAAGAATGGTGTTGCTGCTATTGTTGACGAGCGATCATATGCAGAGCTCTTCCTTTCAACCCATTGCGAATTCAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGCGACTCTCCTTTAGCAGTCGACATGTCCACGGCTATTCTAAGACTGTCCGAAAATGGGGATCTTCAAAGGATCCATGATAAATGGTTAATGAAAAGTGCCTGCACATCACAAGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGCTTGCTCGCTCTAGTAATATACCTCTTTCAAACGGTGCGCCAATATAGTGAGCATTACTCTGAAGAACTCGGGTCTTCTGAGCAAACCTCTCGATCTGCAAGCCTGCATAGATTTCTTTCTTTTGCGGATGAAAAGGAAGATGTCATCAGGAGTCGATCCAAGCGAAGACAAATGCAGGAGGCTTCCGTGAGAAACGTGAATGGAGAAAATTCAACAGGCAGTTCAAGAAAATTTGGCCATGGTGATGCTGATGATGGTACATATTGA 3006 42.35 MKFDSRVLKWLRPSIVMEGASVNVRTAHNDSAIFVRLIAVGLFIHLLLLCFLPFGLASNGSNEVIESLSLCSLIVGSVNSVLVSFSSIGDSTNISTRPDVVNIGALFSFRSMIGRVGKIAVEAAVEDVNSDPSILGGTKLKLTLHDTNYSGFLGIIESLRFMETETMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWREVIAIFGDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTDALVKVALTESRILVVHTYESTGMVVLNVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPPASMENIQGLVALRLYTPDSALKRKFVSRWTNLTYGKSANGSLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSNLSKLSGTDVGTLNFNSMSVFNGGKMLLHKILDVNFTGITGPVEFTPDRDLIHPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYLKPPNRSSLNQKLYDVVWPGQATQKPRGWAFPNRGRHLRIGVPRRISYQEFVSQVEGTDMFSGYCIDIFTAAINMLPYAVPYKLIPFGDGLTNPSTTELVRLITTGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVIAPVKKLNSNAWAFLRPFTPKMWCITAVSFLVVGAVVWILEHRINDDFRGPPKRQVITILWFSFSTLFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSSVKGIETLVSNNDPIGYQQGSFTRNYLIEELGIHESRLVPLLSTEHCVKALKDGPKKNGVAAIVDERSYAELFLSTHCEFSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALVIYLFQTVRQYSEHYSEELGSSEQTSRSASLHRFLSFADEKEDVIRSRSKRRQMQEASVRNVNGENSTGSSRKFGHGDADDGTY 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76350376 76354824 + Tan0003261.1 Tan03g2176 747680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2176 1001 Pfam Receptor family ligand binding region 119 478 IPR001828 -
Tan03g2176 1001 FunFam Glutamate receptor 535 651 - -
Tan03g2176 1001 Gene3D - 216 493 - -
Tan03g2176 1001 SUPERFAMILY Periplasmic binding protein-like I 97 531 IPR028082 -
Tan03g2176 1001 MobiDBLite consensus disorder prediction 973 990 - -
Tan03g2176 1001 Gene3D - 850 880 - -
Tan03g2176 1001 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 174 202 - -
Tan03g2176 1001 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 130 - -
Tan03g2176 1001 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 391 403 - -
Tan03g2176 1001 MobiDBLite consensus disorder prediction 962 1001 - -
Tan03g2176 1001 FunFam Glutamate receptor 651 781 - -
Tan03g2176 1001 SMART GluR_14 541 882 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan03g2176 1001 PIRSF IGluLR_plant 68 998 IPR017103 -
Tan03g2176 1001 FunFam Glutamate receptor 777 884 - -
Tan03g2176 1001 CDD PBP1_GABAb_receptor_plant 102 497 IPR044440 -
Tan03g2176 1001 SUPERFAMILY Periplasmic binding protein-like II 518 883 - -
Tan03g2176 1001 CDD GluR_Plant 540 880 - -
Tan03g2176 1001 Gene3D - 119 468 - -
Tan03g2176 1001 Gene3D - 796 849 - -
Tan03g2176 1001 Gene3D - 532 650 - -
Tan03g2176 1001 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 101 963 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Tan03g2176 1001 FunFam Glutamate receptor 216 371 - -
Tan03g2176 1001 Pfam Ligand-gated ion channel 661 913 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan03g2176 1001 Pfam Ligated ion channel L-glutamate- and glycine-binding site 555 643 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Tan03g2176 1001 Gene3D - 651 774 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0564 Tan-Chr2:4991829 Tan03g2176 Tan-Chr3:76350376 1.80E-262 dispersed
Tan02g0565 Tan-Chr2:4991829 Tan03g2176 Tan-Chr3:76350376 2.30E-287 dispersed
Tan03g2176 Tan-Chr3:76350376 Tan05g0868 Tan-Chr5:6890518 1.30E-291 dispersed
Tan03g2176 Tan-Chr3:76350376 Tan01g5130 Tan-Chr1:116637833 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2176 K05387 - csv:101213408 1633.23