Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2189 ATGGCGCTTAATGTTGGGGGATGTGGTCGTAGATCTGGGTATGTAAATCACATGTTTCAACAACGGAGTGCTCATAATTCAAGCTTTCTTCAAAACGATTCATTAGTTCGAGATCAGCATATACCTTCTGATGCCAGCTTGATGGAACCCACAAGTGGAAGTAATGGTCCTAGCAACAACCCGAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTAGCACAACTTGGTGGTCCAGATCGTGCTACACCTAAAGGTGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTTAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGTTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAGCAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGTTGCCTCTTCCTTTTCAGCTCCTGCTTCTGGTGACAACTCCCCAGAAACTGATAAAAACGACCCACCAACACCTGCGCCCACATCCGAGTCTCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCAGCACGAACCATCAACACCAGATTCTGGTTGCCATAGCTCCCCAAATGAGAGCCCAAGGCCAGTGAAGAAACAAAGGCAGTTCAGGGATGGTGCATTTGCCAAATCAGAGATGATATTTGCACATCAAATACTGGAATCAAGTCTAAACTCCACTCTCAAGGAGTCGCGCTCTGTTTTTCCAGCCCGGGAAAAGTTTGATTCTTCATCTGGAATATCGATAGGGGAAGACAATCGGTTGGACTAA 1032 45.35 MALNVGGCGRRSGYVNHMFQQRSAHNSSFLQNDSLVRDQHIPSDASLMEPTSGSNGPSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASSFSAPASGDNSPETDKNDPPTPAPTSESPRQEKASKERAQAKSVSIDDSFSSQHEPSTPDSGCHSSPNESPRPVKKQRQFRDGAFAKSEMIFAHQILESSLNSTLKESRSVFPAREKFDSSSGISIGEDNRLD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76424254 76427429 - Tan0005077.1 Tan03g2189 747693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2189 343 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Tan03g2189 343 Coils Coil 155 175 - -
Tan03g2189 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 123 IPR017930 -
Tan03g2189 343 MobiDBLite consensus disorder prediction 254 283 - -
Tan03g2189 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677(InterPro)
Tan03g2189 343 MobiDBLite consensus disorder prediction 44 64 - -
Tan03g2189 343 Pfam MYB-CC type transfactor, LHEQLE motif 152 198 IPR025756 -
Tan03g2189 343 Gene3D - 65 124 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 310 343 - -
Tan03g2189 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 33 279 IPR046955 GO:0003700(InterPro)
Tan03g2189 343 MobiDBLite consensus disorder prediction 125 148 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 126 142 - -
Tan03g2189 343 Pfam Myb-like DNA-binding domain 68 119 IPR001005 -
Tan03g2189 343 FunFam Myb family transcription factor 65 123 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 207 292 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 207 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2189 Tan-Chr3:76424254 Tan08g1372 Tan-Chr8:54544996 6.30E-44 dispersed
Tan03g2189 Tan-Chr3:76424254 Tan03g2190 Tan-Chr3:76431564 2.20E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27066 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2189 - - - 0.0