Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2189 ATGGCGCTTAATGTTGGGGGATGTGGTCGTAGATCTGGGTATGTAAATCACATGTTTCAACAACGGAGTGCTCATAATTCAAGCTTTCTTCAAAACGATTCATTAGTTCGAGATCAGCATATACCTTCTGATGCCAGCTTGATGGAACCCACAAGTGGAAGTAATGGTCCTAGCAACAACCCGAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTAGCACAACTTGGTGGTCCAGATCGTGCTACACCTAAAGGTGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTTAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGTTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAGCAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGTTGCCTCTTCCTTTTCAGCTCCTGCTTCTGGTGACAACTCCCCAGAAACTGATAAAAACGACCCACCAACACCTGCGCCCACATCCGAGTCTCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCAGCACGAACCATCAACACCAGATTCTGGTTGCCATAGCTCCCCAAATGAGAGCCCAAGGCCAGTGAAGAAACAAAGGCAGTTCAGGGATGGTGCATTTGCCAAATCAGAGATGATATTTGCACATCAAATACTGGAATCAAGTCTAAACTCCACTCTCAAGGAGTCGCGCTCTGTTTTTCCAGCCCGGGAAAAGTTTGATTCTTCATCTGGAATATCGATAGGGGAAGACAATCGGTTGGACTAA 1032 45.35 MALNVGGCGRRSGYVNHMFQQRSAHNSSFLQNDSLVRDQHIPSDASLMEPTSGSNGPSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASSFSAPASGDNSPETDKNDPPTPAPTSESPRQEKASKERAQAKSVSIDDSFSSQHEPSTPDSGCHSSPNESPRPVKKQRQFRDGAFAKSEMIFAHQILESSLNSTLKESRSVFPAREKFDSSSGISIGEDNRLD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76424254 76427429 - Tan0005077.1 Tan03g2189 747693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2189 343 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Tan03g2189 343 Coils Coil 155 175 - -
Tan03g2189 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 123 IPR017930 -
Tan03g2189 343 MobiDBLite consensus disorder prediction 254 283 - -
Tan03g2189 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677(InterPro)
Tan03g2189 343 MobiDBLite consensus disorder prediction 44 64 - -
Tan03g2189 343 Pfam MYB-CC type transfactor, LHEQLE motif 152 198 IPR025756 -
Tan03g2189 343 Gene3D - 65 124 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 310 343 - -
Tan03g2189 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 33 279 IPR046955 GO:0003700(InterPro)
Tan03g2189 343 MobiDBLite consensus disorder prediction 125 148 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 126 142 - -
Tan03g2189 343 Pfam Myb-like DNA-binding domain 68 119 IPR001005 -
Tan03g2189 343 FunFam Myb family transcription factor 65 123 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 207 292 - -
Tan03g2189 343 MobiDBLite consensus disorder prediction 207 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2189 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2189 Tan-Chr3:76424254 Tan08g1372 Tan-Chr8:54544996 6.30E-44 dispersed
Tan03g2189 Tan-Chr3:76424254 Tan03g2190 Tan-Chr3:76431564 2.20E-20 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27066 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Tan TF