Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2236 ATGCAAGCATCTCGGAATCGCCGGTCTTCACCTGGGATCCATGAGATGTATCACCAGCCTGTGCAAGAGATGGAACCCTACTATTTATCTCATTTCCACGTTTTGGAAAACAATGTCTCTCCTGATGCAAGCAGTCAGGGAAACAGTGTTAACTTTTCTTCCTATAAGGATCAGTTCTTTACTCTGGAATCATTCCCGGCTACAGCTGATCTGAGTGCCTGTAATTCCCCTTCTGCTGTTAGTGTTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGTTCTCAATCGTGCTCTTCAGATCAACATCATTCCTTTGACAACACATGTGGATCACCACTAAGTGGATGCTCGGTAACTGATGATGATAATGAATTAAAGCACAAGCTGAAGGAATTAGAAATTTCTTTATTGGGGCCTGAATCTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGTGCATCGAGATGCTTCAGTGGCAAGGTGGAACTGGAATCAAATGGTTGAAATGATTCCTAGACTTGGTCTTCGGGACATGCTCATCCGTTGTGCCCAAGCAATTCATGAGGCTGATTTAAATGCGGCAACATCATTTATGGATGTTTTGGGGCAGATGGTCTCGGTCTCAGGTGATCCCGCTCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCGAGGGTGGAACGATCAGGGAGTGCAATATACAAGGCCCTTAAGTGCGAAGAGCCCACAAGCTCTGAACTAATGTCCTATATGTCTGTTCTATTCCAGATCTGCCCATACTTCAAATTTGCTTATACTTCTGCAAACGCTTTCCTTTGGGAGGCCATGATAAATGAACCCGTTGTACACATTATTGATTTTCAAATTGCACAGGGTAGTCAGTATATACCTCTCATTCATGATCTTGCCAATCGGCCCGGTGGACCCCCAGTTCTTCTTCGGATTACAGGTGTGGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTGGGACAGAGGCTAGCTCAGCTGGCACAGTCAAAAGGAATTCCCTTTCAATTTCATGCTGCTGCAATGTCTGGTTGCGAAGTCGAACGCAGTAATCTTAGAATACGACCTGGAGAAGCGTTGGCAGTAAATTTTCCATATGCATTGCACCACATGCCAGATGAGAGCGTGAGCACACAGAACCATCGAGACAGGCTTCTAAGGTTGGTTAAAAGTCTGTCGCCAAAAGTAGTAACTATTGTCGAGCAGGAATCCAACACCAACACATCCCCATTCTTTCTACGTTTTATAGAGACACTGGATTATTATACTGCTATGTTCGAATCCATAGACGTAGCTCGTTCAAGAGACGACAAGCAGCGAATCAGGGCAGAGCAGCACTGTGTGGCCCGAGACATAGTGAACATGGTAGCTTGTGAGGGATTTGAAAGGGTAGAACGCCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAAAATGGCTGGTTTTACTCAATATCCAATGAGCTCTTCTGTAACGGGAGCCATCAAGAATATGTTGAGGGAGTTCAACGAGAACTACAGACTCCAAGAAGCAGAAGGGGCTCTCTACCTTGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGATGA 1650 46.12 MQASRNRRSSPGIHEMYHQPVQEMEPYYLSHFHVLENNVSPDASSQGNSVNFSSYKDQFFTLESFPATADLSACNSPSAVSVLSSRSPFSPQGSQSCSSDQHHSFDNTCGSPLSGCSVTDDDNELKHKLKELEISLLGPESDIVDSCYCSFRGGVHRDASVARWNWNQMVEMIPRLGLRDMLIRCAQAIHEADLNAATSFMDVLGQMVSVSGDPAQRLGAYLLEGLRARVERSGSAIYKALKCEEPTSSELMSYMSVLFQICPYFKFAYTSANAFLWEAMINEPVVHIIDFQIAQGSQYIPLIHDLANRPGGPPVLLRITGVDDSQSAHARGGGLQIVGQRLAQLAQSKGIPFQFHAAAMSGCEVERSNLRIRPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFFLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMKMAGFTQYPMSSSVTGAIKNMLREFNENYRLQEAEGALYLGWKNRAMATSSAWR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76725456 76727105 + Tan0012241.1 Tan03g2236 747740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2236 549 Pfam GRAS domain family 178 549 IPR005202 -
Tan03g2236 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Tan03g2236 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 147 548 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2236 Tan-Chr3:76725456 Tan05g0965 Tan-Chr5:7949260 2.70E-166 dispersed
Tan03g2236 Tan-Chr3:76725456 Tan08g2009 Tan-Chr8:72165090 4.50E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27073 PF03514 GRAS 3.90E-126 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2236 K27748 - csv:101207883 961.059