Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g2274 | ATGGATGGTCCTAGTGGAAGTTCTTCAGGTATGATGAATTTTGGAGATCAAAATAATAATGGGTTGTGTTCCATGATGATGATGCCTTTAATGTCCTCTCATCAACACCAACACCAAGGAGATGCATGTAATCCATTTCCTCCTCTTCCAACTCCTAATTACAACCACAACAACAACAATTCTTCTTCTAGTAACCCTATTTGTTACTTCATGGACGAAAACACCACCAACAACAACGAGGCTAATAATGCAAATTCTTCTTCTTGTCAAGTTAAGGCTAAAATTATGGCTCATCCCCACTACCATCGTCTCCTCGCTGCGTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTTGAAGAAGCATGTGCATCTGCTGCAACCATTAGTGGTTCGTCTTGTACTGGCTGTATTGGTGAAGATCCGGCTCTTGACCAGTTCATGGAAGCTTATTGTGAGATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAGCGAATTGAGTGCCAATTTAAAGCCCTCTCTATTTCCTCCTCCGATGCTGCTTGTGGTGAGGCATTTGATAGGAATGGATCATCTGAAGAGGAAGTCGATATCAATGGCCAATCCATCGACCCCCAAGCCGAAGACCGTGAACTGAAAGGTCAGCTCCTCCGCAAGTACAGCGGATACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAGGCCAGACAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTGGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCACATCCACAGTATTACATGGACACCGTCTTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTACTCTAA | 1035 | 44.25 | MDGPSGSSSGMMNFGDQNNNGLCSMMMMPLMSSHQHQHQGDACNPFPPLPTPNYNHNNNNSSSSNPICYFMDENTTNNNEANNANSSSCQVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEACASAATISGSSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIECQFKALSISSSDAACGEAFDRNGSSEEEVDINGQSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 77008845 | 77013808 | + | Tan0002768.1 | Tan03g2274 | 747778 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g2274 | 344 | SUPERFAMILY | Homeodomain-like | 248 | 322 | IPR009057 | - | |
Tan03g2274 | 344 | CDD | homeodomain | 258 | 310 | IPR001356 | GO:0003677(InterPro) | |
Tan03g2274 | 344 | SMART | HOX_1 | 248 | 313 | IPR001356 | GO:0003677(InterPro) | |
Tan03g2274 | 344 | Pfam | KNOX1 domain | 91 | 129 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan03g2274 | 344 | Pfam | KNOX2 domain | 142 | 188 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan03g2274 | 344 | ProSitePatterns | 'Homeobox' domain signature. | 284 | 307 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Tan03g2274 | 344 | FunFam | Homeobox protein knotted-1-like 2 | 251 | 313 | - | - | |
Tan03g2274 | 344 | Pfam | Homeobox KN domain | 266 | 305 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Tan03g2274 | 344 | ProSiteProfiles | ELK domain profile. | 226 | 246 | IPR005539 | GO:0003677(InterPro) | |
Tan03g2274 | 344 | ProSiteProfiles | 'Homeobox' domain profile. | 246 | 309 | IPR001356 | GO:0003677(InterPro) | |
Tan03g2274 | 344 | SMART | ELK_2 | 226 | 247 | IPR005539 | GO:0003677(InterPro) | |
Tan03g2274 | 344 | Pfam | ELK domain | 226 | 247 | IPR005539 | GO:0003677(InterPro) | |
Tan03g2274 | 344 | SMART | KNOX1_2 | 89 | 133 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan03g2274 | 344 | SMART | KNOX2_2 | 139 | 190 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan03g2274 | 344 | Gene3D | - | 251 | 313 | - | - | |
Tan03g2274 | 344 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 91 | 316 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g0385 | Tan-Chr2:3239913 | Tan03g2274 | Tan-Chr3:77008845 | 2.00E-106 | dispersed | |
Tan02g0386 | Tan-Chr2:3239913 | Tan03g2274 | Tan-Chr3:77008845 | 1.00E-71 | dispersed | |
Tan03g2274 | Tan-Chr3:77008845 | Tan04g1268 | Tan-Chr4:12193149 | 1.10E-64 | dispersed | |
Tan03g2274 | Tan-Chr3:77008845 | Tan01g4652 | Tan-Chr1:112415028 | 1.40E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27075 | PF03791 | KNOX2 | 2.50E-20 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g2274 | - | - | - | 0.0 |