Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2274 ATGGATGGTCCTAGTGGAAGTTCTTCAGGTATGATGAATTTTGGAGATCAAAATAATAATGGGTTGTGTTCCATGATGATGATGCCTTTAATGTCCTCTCATCAACACCAACACCAAGGAGATGCATGTAATCCATTTCCTCCTCTTCCAACTCCTAATTACAACCACAACAACAACAATTCTTCTTCTAGTAACCCTATTTGTTACTTCATGGACGAAAACACCACCAACAACAACGAGGCTAATAATGCAAATTCTTCTTCTTGTCAAGTTAAGGCTAAAATTATGGCTCATCCCCACTACCATCGTCTCCTCGCTGCGTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTTGAAGAAGCATGTGCATCTGCTGCAACCATTAGTGGTTCGTCTTGTACTGGCTGTATTGGTGAAGATCCGGCTCTTGACCAGTTCATGGAAGCTTATTGTGAGATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAGCGAATTGAGTGCCAATTTAAAGCCCTCTCTATTTCCTCCTCCGATGCTGCTTGTGGTGAGGCATTTGATAGGAATGGATCATCTGAAGAGGAAGTCGATATCAATGGCCAATCCATCGACCCCCAAGCCGAAGACCGTGAACTGAAAGGTCAGCTCCTCCGCAAGTACAGCGGATACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAGGCCAGACAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTGGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCACATCCACAGTATTACATGGACACCGTCTTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTACTCTAA 1035 44.25 MDGPSGSSSGMMNFGDQNNNGLCSMMMMPLMSSHQHQHQGDACNPFPPLPTPNYNHNNNNSSSSNPICYFMDENTTNNNEANNANSSSCQVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEACASAATISGSSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIECQFKALSISSSDAACGEAFDRNGSSEEEVDINGQSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77008845 77013808 + Tan0002768.1 Tan03g2274 747778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2274 344 SUPERFAMILY Homeodomain-like 248 322 IPR009057 -
Tan03g2274 344 CDD homeodomain 258 310 IPR001356 GO:0003677(InterPro)
Tan03g2274 344 SMART HOX_1 248 313 IPR001356 GO:0003677(InterPro)
Tan03g2274 344 Pfam KNOX1 domain 91 129 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan03g2274 344 Pfam KNOX2 domain 142 188 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan03g2274 344 ProSitePatterns 'Homeobox' domain signature. 284 307 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan03g2274 344 FunFam Homeobox protein knotted-1-like 2 251 313 - -
Tan03g2274 344 Pfam Homeobox KN domain 266 305 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g2274 344 ProSiteProfiles ELK domain profile. 226 246 IPR005539 GO:0003677(InterPro)
Tan03g2274 344 ProSiteProfiles 'Homeobox' domain profile. 246 309 IPR001356 GO:0003677(InterPro)
Tan03g2274 344 SMART ELK_2 226 247 IPR005539 GO:0003677(InterPro)
Tan03g2274 344 Pfam ELK domain 226 247 IPR005539 GO:0003677(InterPro)
Tan03g2274 344 SMART KNOX1_2 89 133 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan03g2274 344 SMART KNOX2_2 139 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan03g2274 344 Gene3D - 251 313 - -
Tan03g2274 344 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 316 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0385 Tan-Chr2:3239913 Tan03g2274 Tan-Chr3:77008845 2.00E-106 dispersed
Tan02g0386 Tan-Chr2:3239913 Tan03g2274 Tan-Chr3:77008845 1.00E-71 dispersed
Tan03g2274 Tan-Chr3:77008845 Tan04g1268 Tan-Chr4:12193149 1.10E-64 dispersed
Tan03g2274 Tan-Chr3:77008845 Tan01g4652 Tan-Chr1:112415028 1.40E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27075 PF03791 KNOX2 2.50E-20 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2274 - - - 0.0