Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2286 ATGGCTAATTTCCTATTCCTCTTTCTCCTAGCCACAATCATCATCCCTTCACATTCCACGCCCTACCCCAACAAGAGACTCTCCCTCAATCCCATCGACGCATGCTGGCGAACCGACCCCAACTGGGCGGCCAACCGTCGCGCCCTAGCCAACTGCGCCGTGGGGTTTGGCAAAGACGCCATCGGAGGCAAATTCGGGCTGATCTACAAGGTCACAGACCCATCTGACGACCCCGAATATCCGAAGCCAGGAACGCTGCGGTTCGGGTTGATCCAACCGCAGCCGTTATGGATCATGTTTGCAAAGGACATGGTGATCACGCCCAAAAGAGAGCTGATGGTGAACAGCTTCAAGACCATCGACGGGCGAGGAGCCAAGGTGGAGATTGCCAATGGGCCATGCATTACCATTCAAAACGTGAGCCATGTGATTATTCATGGGATCAGCATCCATGATTGTAAGCCCGCCAAGCCTGGGCGCGTGAGGAGCAGCGTTGACCACTGTGGTGAGCGGCAAGAGAGTGATGGAGACGCCATTTCTATTTTCACTTCTTCGCATATTTGGATTGACCATTGCTCTTTGGCTCGCTGCACTGATGGCCTGATTGATGTCATTCATGCTTCTACTGCTGTCACTATCTCCAACAATTACTTCACTCAACATGACAAAGTGATCCTTCTTGGGCACAACGATGAATTTACAGCTGATAGAATTATGAGAGTCACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCCAGGGTGAGACATGGGTATGCCCATGTTGCCAATAATTGGTACAACAAATGGCAAATGTACGCCGTGGGTGGTAGTGCCGATCCAACAATCTTCAGTCAAGGAAACTACTTCATGGCTCCTGATGAACTTTGCTCAAAGCAGGTTACAAAGAGAGAGGTTTATGAGAGTGGATGGAAGAAATGGAAATGGAGGTCTTCAAATGATGTGTATTTGAATGGGGCTTATTTTATCCCATCTGGATGGGGAACTTGTACGCCATTCTACACTCGAGCTCAAGCATTTCCTGTGGCTCATGGCTCTTTGGTTCCTCTCTTGACCGATGGCGCTGGCGTTTTGAGTTGTGTTCTTGGTAAAGCTTGTTGA 1134 49.38 MANFLFLFLLATIIIPSHSTPYPNKRLSLNPIDACWRTDPNWAANRRALANCAVGFGKDAIGGKFGLIYKVTDPSDDPEYPKPGTLRFGLIQPQPLWIMFAKDMVITPKRELMVNSFKTIDGRGAKVEIANGPCITIQNVSHVIIHGISIHDCKPAKPGRVRSSVDHCGERQESDGDAISIFTSSHIWIDHCSLARCTDGLIDVIHASTAVTISNNYFTQHDKVILLGHNDEFTADRIMRVTVAFNRFGDGLVQRMPRVRHGYAHVANNWYNKWQMYAVGGSADPTIFSQGNYFMAPDELCSKQVTKREVYESGWKKWKWRSSNDVYLNGAYFIPSGWGTCTPFYTRAQAFPVAHGSLVPLLTDGAGVLSCVLGKAC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77054655 77057334 + Tan0009713.1 Tan03g2286 747790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2286 377 Pfam Pectate lyase 110 294 IPR002022 -
Tan03g2286 377 Gene3D - 29 370 IPR012334 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Tan03g2286 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Tan03g2286 377 SMART amb_all 103 300 IPR002022 -
Tan03g2286 377 PANTHER PECTATE LYASE 18-RELATED 6 373 IPR045032 GO:0030570(InterPro)
Tan03g2286 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2286 Tan-Chr3:77054655 Tan11g0685 Tan-Chr11:5943029 3.70E-122 dispersed
Tan03g2286 Tan-Chr3:77054655 Tan05g3058 Tan-Chr5:82843800 1.00E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2286 K01728 - csv:101210816 653.284