Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2288 ATGGACAAAGGATGGGGTCTAACCCTTCGTGATTCCGATCAGTCTATTGGGTTTTTCTCAACCAAGCCACCGCCTCCTCCTGTCAATTCATTTCAGAGAGTAATGTTTCAAGGTATTGAATTTTCCGGTAAACTTGGCCGGAGTGACGACGACGACGCTACTCCACCTCCGACCGATCAGAATCGGTTGGTGGTCAACGAGGTCGACTTTTTTAAAGATAAGAAAAGGGTGGTTGATGATAGGGAGGATCAAGAGTCGAAACCTTCGGTTAATATTATCGCCACCGCTGTCAATAAAGACAGCAAGAATTTGACTGCTCCCAGAACTGGCTTCAATCTCGTTAACACTGGTTTGCATCTGTTAACTGCTAACACCGGAAGCGATCAATCAACGGTGGATGATGGGATTTCATCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAGCTTCAAGTGGAGCTACAGCGTATGAACGCCGAGAATCACAAGCTTAGGGACATGCTAAGCCATGTGAGTAACAACTACAGTACCCTACAAATGCATCTCTTGACATTAATGCAACAACAACAAAATCAGACCTCGGAACCCGCTCATGAAAGAGAGATTGGGGAGAAGAAATCCAGGGAAAAACATGATGAAGTTGGAAGGGTGGTAATACCGAGGCAATTTATGGATCTAGGACCCAGTGGGAACACAGCTGAAACCGATCATGAATTATCTCATTCATCATCGGATGAAAGAACTCGTTCTGGTTCTCCATTATTAAACAACACAGAAACCGCTTCAAAAAAGAGCACAGCCGAAATCGCTCCTTCCGATCACGAGAATGCCAAAAGATCCATCGCTAGAGAAGAAAGCCCCGAATCAGAATCTCACGCCTGGGGAGGTCCTAATAAAGCCCCTCGATTGAACTCTTCTTCTAAACCAGTCGATCAATCCACCGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCCAAAGGAAACCCCTGTCCACGGGCGTATTATCGGTGCACAATGGCAGTGGGTTGCCCAGTTCGCAAGCAAGTACAACGTTGCGCTGAAGACAGGACTATATTAATAACAACCTACGAAGGAAACCACAACCACCCACTTCCGCCGGCGGCGATGGCGATGGCGTCCACCACGACGACGGCGGCTAGTATGTTGTTATCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACACCAAACCCATTGCAGTTTCAAAGACCGGCGGCGACGCCGTTCCACGTGCCGTTCGCCGGCGGGCAGCCACCGTCTGCCGCCCAATTGCCGCAGGTTTTGGGGCAAGCGTTGTACAATCAATCAAAATTCTCGGGGCTACAGCTGTCTCATGAGATGGGGGCTAATTCTTCCCATTTGGGTCACCATCAAATTGCACAGCCGGTAGCGGCAGCGGCCCAGCCTGGTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATCACTGCCGATCCCAATTTCACTGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCGAATAATAATAACACCACCCCCACCAATAATTCTACTATTACTACATCAAACAACAACAACGGAAACAACAACAGCAAAATTAGCAGTTTCCCTGGAAATTAA 1830 48.74 MDKGWGLTLRDSDQSIGFFSTKPPPPPVNSFQRVMFQGIEFSGKLGRSDDDDATPPPTDQNRLVVNEVDFFKDKKRVVDDREDQESKPSVNIIATAVNKDSKNLTAPRTGFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSTLQMHLLTLMQQQQNQTSEPAHEREIGEKKSREKHDEVGRVVIPRQFMDLGPSGNTAETDHELSHSSSDERTRSGSPLLNNTETASKKSTAEIAPSDHENAKRSIAREESPESESHAWGGPNKAPRLNSSSKPVDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTTAASMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFAGGQPPSAAQLPQVLGQALYNQSKFSGLQLSHEMGANSSHLGHHQIAQPVAAAAQPGGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNNTTPTNNSTITTSNNNNGNNNSKISSFPGN 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77077856 77080910 + Tan0013904.1 Tan03g2288 747792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2288 609 MobiDBLite consensus disorder prediction 248 269 - -
Tan03g2288 609 MobiDBLite consensus disorder prediction 572 609 - -
Tan03g2288 609 MobiDBLite consensus disorder prediction 190 323 - -
Tan03g2288 609 Gene3D WRKY domain 321 398 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2288 609 FunFam probable WRKY transcription factor 31 321 398 - -
Tan03g2288 609 SMART WRKY_cls 336 396 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2288 609 MobiDBLite consensus disorder prediction 270 292 - -
Tan03g2288 609 SUPERFAMILY WRKY DNA-binding domain 329 397 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2288 609 ProSiteProfiles WRKY domain profile. 331 397 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2288 609 MobiDBLite consensus disorder prediction 302 321 - -
Tan03g2288 609 Coils Coil 142 176 - -
Tan03g2288 609 MobiDBLite consensus disorder prediction 199 220 - -
Tan03g2288 609 Pfam WRKY DNA -binding domain 338 395 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan03g2288 609 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 131 578 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0355 Tan-Chr2:3055217 Tan03g2288 Tan-Chr3:77077856 4.00E-122 dispersed
Tan03g2288 Tan-Chr3:77077856 Tan05g2089 Tan-Chr5:71364311 4.00E-41 dispersed
Tan03g2288 Tan-Chr3:77077856 Tan09g2157 Tan-Chr9:71677977 9.40E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27076 PF03106 WRKY 5.40E-24 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2288 - - - 0.0