Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2300 ATGGCGAGATTTCTATACAAAGAAGAACAATTTCTGCACAAATCAGATAATGACGATATCAAACCCCCAAGGATATGTAAGTGGCATCAAGTATGGAGGCATGGACAATCTGTTAGATGTAAAATCAAATATTGGGATATCAACTGGAGTTGGCCTGGAGGCCAGGACAGATACCAATTGCTTAAAGGATCTGAATTTAATGTAATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAAAGTTTTCAACCCCTCAACTCGAGGCAACAAACTTCCCCTTGGTGTGGACATAAGGTACATCATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCGTCAGAATGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAATTACGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAATTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCAGTGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGGTAGTTTTTCCAAGCCATGAGTTTCGAAATGGCGGTCCTACAAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGACATACTGACACATATTAAGGAGGGAGTGACATGGCGAAAGGTCTTTGGTCCTGTTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATGGATGCAAAAGAACAGAGAATGCTAGAGGAAACAGCATGGCCCTACAATTTTGTCTCATCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTATATTTCAAGTTCCCCCATCCCTGCTAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAGAGCAAGGAATATCAATTTTGGGTACAAACAGAATCTAATGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACAGTATCTGCAGGATCTCAAATCCATCTTGGCATTCTGACCTACAGTCCCCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTTTCCTGACCGTACAGCTAATAGCTTCTATGTTCCTGATGTGAATCCAATGTACGCCAACAAGTTATTTCTTCACAGCCCTGAAAAGTTCAGGCAATATGGTTTATGGGAGAGATACAGTGATTTACATCCAATAAACGACCAAGTTTTCATTGTGGGTATCAATGATCCGAAGAAAGACTGGTTTTTTGCTCAAGTTTGCAGAAAAGATGAAGATGGTAAGTATGTTGCAACGACATGGACAATCAAGTTCATCATGACATCATTAACCAATGGAACTTATCGACTGAGATTGGCAATTGCATCTGCAACACGCTCCGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCCCTGGTTTTCCAGCTGATGAATCTGGGAATGGATAACACGGTTTGTCGACATGGAAATCATGGACTGTATCGGCTTTATAGTATCGACATTCCATCTTCAATGCTTGTTAAGGGAGACAACTCCATCTTTCTCACACAGGCAAGGAATGGAGATGCGCTCTGTGGAATTTTGTATGATTATTTAAGACTGGAAGCTCCTGATACTCCATGA 1869 41.36 MARFLYKEEQFLHKSDNDDIKPPRICKWHQVWRHGQSVRCKIKYWDINWSWPGGQDRYQLLKGSEFNVINTSDDTIEISFRKVFNPSTRGNKLPLGVDIRYIMRTGIPGFYCYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSVDNKDGGVHGWISSSPNNIGFWVVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGVTWRKVFGPVLVYLNSTSDVSEAHNLWMDAKEQRMLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRYISSSPIPARDAHIGLSAAREEGAWQTESKEYQFWVQTESNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSQIHLGILTYSPLRDGPTLWEIGFPDRTANSFYVPDVNPMYANKLFLHSPEKFRQYGLWERYSDLHPINDQVFIVGINDPKKDWFFAQVCRKDEDGKYVATTWTIKFIMTSLTNGTYRLRLAIASATRSDLKINVNSMGSESLVFQLMNLGMDNTVCRHGNHGLYRLYSIDIPSSMLVKGDNSIFLTQARNGDALCGILYDYLRLEAPDTP 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77147054 77151604 + Tan0012200.1 Tan03g2300 747804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2300 622 Gene3D - 317 418 - -
Tan03g2300 622 Pfam Rhamnogalacturonate lyase family 43 188 IPR010325 -
Tan03g2300 622 Pfam Polysaccharide lyase family 4, domain II 345 415 IPR029413 -
Tan03g2300 622 CDD RGL4_M 320 417 IPR029413 -
Tan03g2300 622 SUPERFAMILY Starch-binding domain-like 315 418 IPR013784 GO:0030246(InterPro)
Tan03g2300 622 Gene3D - 50 291 IPR014718 GO:0030246(InterPro)
Tan03g2300 622 CDD RGL4_N 44 287 - -
Tan03g2300 622 Gene3D - 427 617 - -
Tan03g2300 622 Pfam Polysaccharide lyase family 4, domain III 429 616 IPR029411 -
Tan03g2300 622 SUPERFAMILY Galactose-binding domain-like 426 617 IPR008979 -
Tan03g2300 622 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 42 620 IPR051850 -
Tan03g2300 622 CDD RGL4_C 431 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1764 Tan-Chr3:73473345 Tan03g2300 Tan-Chr3:77147054 7.20E-156 dispersed
Tan03g2300 Tan-Chr3:77147054 Tan02g2451 Tan-Chr2:93136837 3.50E-186 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2300 K18195 - csv:101220336 1129.78