Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2312 ATGGCTTGCTCGCACTTGACAATGTGGGTTTCCTCGAAACCGTCTTCATCCGATGCCTCCGCTCTTTCTTTTCGGCCTTTTAACCCTCTTCAAGTTCCTTCGCAAGGCTCTACCTTGCGATCCACATTTGTCGCCTCGATTCAGTGCGGCCTCCGTGAGCTCCGAGAACGGATCGATTCAGTGAAGAACACCCAAAAAATTACTGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTACGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGGCCATTTTCGGAATCTTTAGTTGAAGTTCTTTACAACATCAACGAGCAGCTTCAAACCGAGGATATAGATGTTCCTCTGACAAAAGTCCGACCGGTCAAGAAGGTTGCTTTAATAGTTGTAACAGGGGATCGAGGCCTCTGCGGCAGTTTTAATAATATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAAGGGAATTCGTATTTCCTTCGCCGGCCTTACATTCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCCACAGCTAAAGAAGCTCAGGCCATTGCAGACGATGTTTTCTCCCTCTTTATAAGCGAAGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTGGTTAAATCCGACCCTGTGATCCACACTCTGCTTCCATTGTCACCAAAAGGAGAGATTTGTGATATAAACGGTGTTTGTGTCGATGCCGCAGAGGACGAGTTCTTCAGATTGACAACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCTGTGAGAGCAAAAACCTCAGATTTCTCCCCAATTTTGCAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGGTCATTACAGGAATCGTTAGCTAGTGAACTTGCGGCCAGAATGAGTGCCATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGACGCTGTCTATTGTTTACAACAGACAGCGCCAAGCCAAAATCACTGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTGACTTGA 1116 45.16 MACSHLTMWVSSKPSSSDASALSFRPFNPLQVPSQGSTLRSTFVASIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRAKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77210856 77211971 - Tan0018287.1 Tan03g2312 747816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2312 371 FunFam ATP synthase gamma chain, chloroplastic 49 116 - -
Tan03g2312 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 117 - -
Tan03g2312 371 FunFam ATP synthase gamma chain, chloroplastic 267 370 - -
Tan03g2312 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Tan03g2312 371 Coils Coil 51 71 - -
Tan03g2312 371 FunFam ATP synthase gamma chain, chloroplastic 118 241 - -
Tan03g2312 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Tan03g2312 371 Gene3D - 118 241 - -
Tan03g2312 371 NCBIfam ATP synthase F1 subunit gamma 50 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Tan03g2312 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1705 Tan-Chr1:18129678 Tan03g2312 Tan-Chr3:77210856 3.00E-99 dispersed
Tan03g2312 Tan-Chr3:77210856 Tan05g2365 Tan-Chr5:74987705 4.30E-14 dispersed
Tan03g2312 Tan-Chr3:77210856 Tan05g3088 Tan-Chr5:83056495 4.00E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2312 K02115 - csv:101218747 665.996