Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2336 ATGGCGACCCATCAGCCACTTCTTCATCTTCAACCCCCCAAAACTCCCCGCTCCAAAACCATCTCCATAATCCTCTGTTTTTCTGCAATTTTGTGCTCGGCCCTTTTCATCACCAACAAATTGATCGAATCAAACCCATCTGATGAAAATGATCATCAGTCCTTCCTTTATTCTATCTGCCACAAGGCTTACAACCCATCATCCTGTATTGAAATGGCCGCCGCCTCAGAATTCCCATTTCATCCACAAACCAAAACGACGAACGCAGCTCATTTCTTACAAACTTTCCTGAGGAAATCCACCACGAAAGTAATGAACGCAATCGAGAGCGCCAATGATCTCCGCCGTAGAATCAACGACCCGCGCGGTGAAGCAGCTTTGGCCGATTGCGTCGAGCTCATGGAGATCTCGATGGATCGAATCACGGACTCGATTTCGGCTCTGAAGAACAGAACGAGCGGCTCAATCGAGAATGCGCACACATGGCTGAGCAGCGTGGTGACGAATCACGTGACGTGCTTGGATGAGTTGGAGAATTCGATTCCGAGAGTGGCGGGCATGGAATTGGGGGTTGAAGAGCTGATTATGAGAGGGAGAAATTCATTGGGGATGCTGGTTTCGATTTGGGGATGGGGAAATGAAGAGAAGGGGGAATTGGGGAAATGGGGAAATGGGTATCCGAGTTGGTTGAAGAGTGGAGATCGGAGGCTGTTGGGAGTGGCGGGGAGAGAAATGGAAATGGAAGCGAATATAGTGGTGGCGAAGGACGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAGGCGGTGCCGGATAAGAGTAAGAGCAGAATAGTTATATATGTGAAGAAGGGGATTTATGAAGAGAACGTGGAAGTGGGGAAGAAGAAGAAGAATGTGATGATGGTTGGAGATGGAATGGATTCCACCATTATCACTGCTAGCCTTAACGTCGTTGATGGATCCACAACCTTTAAATCTGCAACTCTTGCTGCCGTGGGAGATGGATTTATAGCCCAAGACATCTGGTTCAGAAACACCGCCGGGCCGGAAAAGCACCAAGCGGTGGCACTTCGAGTCGGAGCAGACCAATCCGTGATAAACCGGTGTCGTATTGACGCTTATCAAGACACTCTCTACACACATTCCAACCGCCAATTCTACCGAGATTCAACCATCACCGGCACCGTCGACTTCATATTCGGCAACGCCGCCGTCGTGTTACAGAACTGCAAAATCGAACCCCGACGGCCGATGAGCAACCAGGCCAACATGGTCACGGCCCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCAATCCAGAGATGCCAAATCGTGGCAAGCTCCGACCTCGAGCCCGTTAAGAAGTCCATTAAGACATATTTGGGCCGACCATGGAAGGAGTATTCGAGGACCGTCGTCATGCAGTCTACAATTGGAGATCTTATAAATCCAGCGGGCTGGGCCGAGTGGGATGGGGACTTTGCATTGAAGACGCTGTATTACGGTGAATATTCCAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTCAAATGGGCCGGTTACCATGTCATTACGAGCCCAGCTGAGGCCCGAAAATTCACCGTGGACTCACTTATACAAGGAGTTGAATGGCTGGGCCCCTCAGGGGTCACTTTTATCCCTGGGCTGTGA 1686 50.36 MATHQPLLHLQPPKTPRSKTISIILCFSAILCSALFITNKLIESNPSDENDHQSFLYSICHKAYNPSSCIEMAAASEFPFHPQTKTTNAAHFLQTFLRKSTTKVMNAIESANDLRRRINDPRGEAALADCVELMEISMDRITDSISALKNRTSGSIENAHTWLSSVVTNHVTCLDELENSIPRVAGMELGVEELIMRGRNSLGMLVSIWGWGNEEKGELGKWGNGYPSWLKSGDRRLLGVAGREMEMEANIVVAKDGSGNFKTVKEAVEAVPDKSKSRIVIYVKKGIYEENVEVGKKKKNVMMVGDGMDSTIITASLNVVDGSTTFKSATLAAVGDGFIAQDIWFRNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQRCQIVASSDLEPVKKSIKTYLGRPWKEYSRTVVMQSTIGDLINPAGWAEWDGDFALKTLYYGEYSNNGPGSDVSKRVKWAGYHVITSPAEARKFTVDSLIQGVEWLGPSGVTFIPGL 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77352184 77354624 - Tan0004838.1 Tan03g2336 747840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2336 561 FunFam Pectinesterase 244 561 - -
Tan03g2336 561 Pfam Pectinesterase 250 546 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan03g2336 561 SMART PMEI_2 51 204 IPR006501 GO:0004857(InterPro)
Tan03g2336 561 SUPERFAMILY Pectin lyase-like 248 560 IPR011050 -
Tan03g2336 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 180 IPR035513 -
Tan03g2336 561 CDD PMEI-like_4 58 208 - -
Tan03g2336 561 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Tan03g2336 561 Gene3D - 244 561 IPR012334 -
Tan03g2336 561 Pfam Plant invertase/pectin methylesterase inhibitor 55 180 IPR006501 GO:0004857(InterPro)
Tan03g2336 561 PANTHER PECTINESTERASE 23 550 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan03g2336 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 207 IPR035513 -
Tan03g2336 561 NCBIfam pectinesterase inhibitor domain 30 180 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2336 Tan-Chr3:77352184 Tan07g0203 Tan-Chr7:4599782 4.70E-121 dispersed
Tan03g2336 Tan-Chr3:77352184 Tan06g0058 Tan-Chr6:751932 8.00E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2336 K01051 - csv:101216377 917.531