Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2382 ATGGCTGAGGATTTTCAAGCTGCTATTTGCGGCGATAATTGGTGGAGCTCTTCAAGAAGCATGTTGGTCGCCGTCGGTGGTTTGTCCCCCTGTTCTGTCGGCATCGGCGACCTTGGTTGGCCGCCGGCCGATGATTTTGTGGACATCAAGCCCAAGTCCGCCACTGATTCCGACCACAACAACAACTCCATGCTTTTTCAAGACTATTCCACCTTCCAAATGATGGGTTTTGCTCTTTCTTCTTCCACCACCTCCGATCACTGGAACCAATCTGATGATTTGCTTTGTGGCGGTGGACGAGGTGAGAGCAACTTCAATTCGAAGGGAATTGAGAGTTACAATGATGAAGAAATTAGAAAAGATTGGAGTTCAACGAAATATTTCTCTTGTGATACGAGCTCCATAAATGGATTGAAAGAAGGAGATCATGAAGATTATAATTTGTTGGAAGAAAATCGTTTGAATTCTATTAACTGTTCATCCACGAGTAGCAGAACCAGTTGCCAGGGTTTATTTCCTCTTGATTCAACTTTATATGGATACCCTTCGGCCTCTTCAACAAAGTTACTCCAAAGTTTATACGATGATCAACAACCACCACATGCCCACTCCCTTTTCAACACAACCCCTTCCATTAACACTAATTCAACTTTCCCCACAAACCCAAATGACTTATCTTTATCCTCAACTCCTAATTTTTCTTCTAATTACATTAAACCCTCACTCCCAAAGCCCCCTCAGCCTCCGCCTGTTTCTGCTGGCTTGCACTTCACCAATAACACTCCCTTTTGGAATGCCTCCGCCGCGGCTTCTTCCACTGACATTCGACAGGGCATTGCAGCTTCCTTACTTGAAGAGAAGAACCCCAAATCCCAAAATAATTCCCTTGTTTTGAAGCCTATTCATAGTGGTAATTGTGAAGATGGTCAAGAACCAAAGAAAGGTAGTGTAACTGAATCAGTACCAGTGTTCAAAAGGCCTCGAATTGAAACTCCTTCACCATTGCCAACATTTAAGGTGCGGAAAGAGAAGCTAGGGGACCGAGTCACTGCCCTTCAACAACTGGTTTCACCGTTTGGAAAGACTGATACTGCCTCCGTTCTACACGAAGCCATTGAGTACATCAAATTCCTCCACGATCAAGTCAGTGTTTTAAGTACTCCATATATGAAGAGCAACAATGGAATAACACCCATCCAACACCAACAGGTATGTGAAAAAGCAGACCCAGATTGGCCAAAACAAGATCTGAGAAGCAGAGGGCTTTGTTTGGTGCCGATTTCAAGCACATTCCCAGTGACGAATGCAGCGACGGCGGATTTCTGGACACCGACGTTCGGCGGAACATTCCGGTGA 1356 44.91 MAEDFQAAICGDNWWSSSRSMLVAVGGLSPCSVGIGDLGWPPADDFVDIKPKSATDSDHNNNSMLFQDYSTFQMMGFALSSSTTSDHWNQSDDLLCGGGRGESNFNSKGIESYNDEEIRKDWSSTKYFSCDTSSINGLKEGDHEDYNLLEENRLNSINCSSTSSRTSCQGLFPLDSTLYGYPSASSTKLLQSLYDDQQPPHAHSLFNTTPSINTNSTFPTNPNDLSLSSTPNFSSNYIKPSLPKPPQPPPVSAGLHFTNNTPFWNASAAASSTDIRQGIAASLLEEKNPKSQNNSLVLKPIHSGNCEDGQEPKKGSVTESVPVFKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKSNNGITPIQHQQVCEKADPDWPKQDLRSRGLCLVPISSTFPVTNAATADFWTPTFGGTFR 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77601358 77604198 + Tan0010985.1 Tan03g2382 747886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2382 451 Gene3D - 339 397 IPR036638 GO:0046983(InterPro)
Tan03g2382 451 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 184 430 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan03g2382 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983(InterPro)
Tan03g2382 451 CDD bHLH_AtbHLH_like 335 386 IPR045239 -
Tan03g2382 451 FunFam Transcription factor bHLH123 family 339 404 - -
Tan03g2382 451 MobiDBLite consensus disorder prediction 200 250 - -
Tan03g2382 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 393 IPR036638 GO:0046983(InterPro)
Tan03g2382 451 MobiDBLite consensus disorder prediction 200 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1650 Tan-Chr1:17283299 Tan03g2382 Tan-Chr3:77601358 1.60E-55 dispersed
Tan01g1651 Tan-Chr1:17283299 Tan03g2382 Tan-Chr3:77601358 2.70E-32 dispersed
Tan03g2382 Tan-Chr3:77601358 Tan03g2384 Tan-Chr3:77601358 1.50E-199 dispersed
Tan03g2382 Tan-Chr3:77601358 Tan03g2383 Tan-Chr3:77601358 6.10E-265 tandem
Tan02g0987 Tan-Chr2:13798182 Tan03g2382 Tan-Chr3:77601358 1.50E-27 transposed
Tan06g1531 Tan-Chr6:22124963 Tan03g2382 Tan-Chr3:77601358 3.00E-15 transposed
Tan10g1368 Tan-Chr10:17052173 Tan03g2382 Tan-Chr3:77601358 9.20E-24 transposed
Tan03g2382 Tan-Chr3:77601358 Tan05g3182 Tan-Chr5:83865952 1.40E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2382 - - - 0.0