Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2387 ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGGTCTTCAATCCAACGGTGGCTCGACGCCGGTCACCGGACTTGTCCGATCACCCAATTGCCCCTTCCTCAAAACCCTTCTCTAATCCCTAACCATGCCCTCAGGAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTTATCTCTCCTTCTTCCTCCCTCGATTCAAGGCTCGATTGCCTCAATCAACTCGCGAGGGTTTCAAAGCGCGATTCCGCTATGCGAAGAAAATTGACCGAGTCCGGTGCCGTCTCGGCCGTTCTTAAATGCGTCGGTTCCGACGATCCGAGCCTCCAAGAGAAAGCGCTGTCCCTGTTGCTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCGATTGGGCTGACCGTGGCGGCTCTTCAAGCCAGGTCCCCCGATTGCAGAGCCGTAGCCGCCACGATGCTAACGAGCTTAGCCGTTGTGGAGGTTAACAAGGCAACAATTGGGGCATATCCCTACGCGATTCGCTCTCTCGTTTTTCTCTTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCAGCAACTGCCCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCAGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATAGCCAATTCGGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGGTTCAATGGAATTGTGGAGATTTTGGGACGTGTTTTAAGAAATGGAACCCCAAGAGGAGTTCAATATGCTCTTATAACGCTGAGTTCTCTCTGCTGCCACAGCGAGCGAACATGCGTGGAAGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGAGCAAACAACACATGA 1098 50.46 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSRLDCLNQLARVSKRDSAMRRKLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVFLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGLLAKCREGREEMQRFNGIVEILGRVLRNGTPRGVQYALITLSSLCCHSERTCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRANNT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77615744 77617383 - Tan0016666.1 Tan03g2387 747891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2387 365 Gene3D - 270 365 IPR011989 -
Tan03g2387 365 Gene3D - 87 211 IPR011989 -
Tan03g2387 365 Gene3D - 212 269 IPR011989 -
Tan03g2387 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g2387 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Tan03g2387 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Tan03g2387 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g2387 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g2387 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Tan03g2387 365 SUPERFAMILY ARM repeat 89 360 IPR016024 -
Tan03g2387 365 SUPERFAMILY RING/U-box 3 72 - -
Tan03g2387 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3668 Tan-Chr1:101555408 Tan03g2387 Tan-Chr3:77615744 4.40E-07 dispersed
Tan03g2387 Tan-Chr3:77615744 Tan11g0293 Tan-Chr11:2314913 5.50E-46 dispersed
Tan03g2387 Tan-Chr3:77615744 Tan05g2026 Tan-Chr5:70391221 1.30E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2387 K27970 - csv:101213883 627.091