Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2387 ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGGTCTTCAATCCAACGGTGGCTCGACGCCGGTCACCGGACTTGTCCGATCACCCAATTGCCCCTTCCTCAAAACCCTTCTCTAATCCCTAACCATGCCCTCAGGAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTTATCTCTCCTTCTTCCTCCCTCGATTCAAGGCTCGATTGCCTCAATCAACTCGCGAGGGTTTCAAAGCGCGATTCCGCTATGCGAAGAAAATTGACCGAGTCCGGTGCCGTCTCGGCCGTTCTTAAATGCGTCGGTTCCGACGATCCGAGCCTCCAAGAGAAAGCGCTGTCCCTGTTGCTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCGATTGGGCTGACCGTGGCGGCTCTTCAAGCCAGGTCCCCCGATTGCAGAGCCGTAGCCGCCACGATGCTAACGAGCTTAGCCGTTGTGGAGGTTAACAAGGCAACAATTGGGGCATATCCCTACGCGATTCGCTCTCTCGTTTTTCTCTTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCAGCAACTGCCCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCAGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATAGCCAATTCGGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGGTTCAATGGAATTGTGGAGATTTTGGGACGTGTTTTAAGAAATGGAACCCCAAGAGGAGTTCAATATGCTCTTATAACGCTGAGTTCTCTCTGCTGCCACAGCGAGCGAACATGCGTGGAAGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGAGCAAACAACACATGA 1098 50.46 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSRLDCLNQLARVSKRDSAMRRKLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVFLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGLLAKCREGREEMQRFNGIVEILGRVLRNGTPRGVQYALITLSSLCCHSERTCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRANNT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77615744 77617383 - Tan0016666.1 Tan03g2387 747891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2387 365 Gene3D - 270 365 IPR011989 -
Tan03g2387 365 Gene3D - 87 211 IPR011989 -
Tan03g2387 365 Gene3D - 212 269 IPR011989 -
Tan03g2387 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g2387 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Tan03g2387 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Tan03g2387 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g2387 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan03g2387 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Tan03g2387 365 SUPERFAMILY ARM repeat 89 360 IPR016024 -
Tan03g2387 365 SUPERFAMILY RING/U-box 3 72 - -
Tan03g2387 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Tan03g2387 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2387 K27970 - - csv:101213883 627.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3668 Tan-Chr1:101555408 Tan03g2387 Tan-Chr3:77615744 4.40E-07 dispersed
Tan03g2387 Tan-Chr3:77615744 Tan11g0293 Tan-Chr11:2314913 5.50E-46 dispersed
Tan03g2387 Tan-Chr3:77615744 Tan05g2026 Tan-Chr5:70391221 1.30E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1421 . 1 1043 U-box Gene Family AT5G15400 76.4 0.0e+00 1578.5
Tan06g1105 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan06g1106 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan05g1595 . 206 839 U-box Gene Family AT2G23140 65.8 2.8e-122 436.8
Tan02g2190 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan02g2191 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan04g0074 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0075 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0076 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0077 . 1 374 U-box Gene Family AT1G24330 63.5 1.3e-129 461.5
Tan02g2190 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan02g2191 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan04g0074 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0075 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0076 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0077 . 1 374 U-box Gene Family AT1G67530 63.0 1.4e-123 441.4
Tan03g2387 . 1 360 U-box Gene Family AT4G21350 63.2 1.1e-121 434.1
Tan07g2078 . 134 456 U-box Gene Family AT3G07360 56.1 5.0e-83 305.4
Tan06g1828 . 260 455 U-box Gene Family AT1G71020 69.7 3.3e-75 280.0
Tan04g1579 . 267 454 U-box Gene Family AT1G71020 72.5 4.8e-74 276.2
Tan11g1796 . 712 904 U-box Gene Family AT1G71020 54.8 3.9e-52 203.4
Tan04g0628 . 250 417 U-box Gene Family AT1G71020 59.6 1.6e-48 191.4
Tan05g0377 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan05g0378 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan01g2462 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Tan04g1579 . 5 658 U-box Gene Family AT1G23030 56.3 1.3e-111 401.4
Tan06g1828 . 5 659 U-box Gene Family AT1G23030 56.9 8.2e-111 398.7
Tan05g0377 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan05g0378 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan01g2462 . 93 632 U-box Gene Family AT2G28830 59.2 5.6e-101 365.9
Tan01g2462 . 1 634 U-box Gene Family AT3G46510 70.1 3.5e-168 589.3
Tan05g0377 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan05g0378 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan04g0628 . 7 624 U-box Gene Family AT3G46510 59.0 9.7e-126 448.4
Tan04g0628 . 1 626 U-box Gene Family AT3G54850 68.7 3.1e-166 582.8
Tan05g0377 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan05g0378 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan01g2462 . 8 639 U-box Gene Family AT3G54850 54.5 6.5e-103 372.5
Tan05g1058 . 28 650 U-box Gene Family AT5G42340 60.0 3.6e-120 429.9
Tan03g0722 . 9 672 U-box Gene Family AT5G01830 57.8 1.5e-203 706.8
Tan05g2530 . 1 716 U-box Gene Family AT1G29340 63.8 2.9e-248 855.5
Tan04g2057 . 27 442 U-box Gene Family AT5G37490 51.6 3.1e-112 402.9
Tan08g1621 . 2 404 U-box Gene Family AT3G52450 52.0 9.5e-122 434.5
Tan03g0650 . 11 424 U-box Gene Family AT3G52450 53.6 4.7e-121 432.2
Tan08g1621 . 2 404 U-box Gene Family AT2G35930 55.1 2.5e-124 443.0
Tan03g0650 . 10 424 U-box Gene Family AT2G35930 53.0 7.1e-119 424.9
Tan01g0691 . 7 422 U-box Gene Family AT3G19380 65.0 1.2e-148 523.9
Tan01g0691 . 1 422 U-box Gene Family AT1G49780 65.0 6.6e-152 534.6
Tan03g1327 . 1 411 U-box Gene Family AT5G64660 54.5 7.1e-122 434.9
Tan03g1327 . 1 411 U-box Gene Family AT5G09800 51.3 9.0e-106 381.3
Tan01g4675 . 1 455 U-box Gene Family AT3G49810 63.4 3.6e-156 548.9
Tan02g1715 . 1 452 U-box Gene Family AT3G49810 62.8 8.2e-153 537.7
Tan01g4675 . 1 455 U-box Gene Family AT5G65920 62.7 4.1e-152 535.4
Tan02g1715 . 1 452 U-box Gene Family AT5G65920 63.8 5.3e-152 535.0
Tan01g0233 . 113 605 U-box Gene Family AT3G49060 50.3 2.4e-131 467.2
Tan10g0201 . 1 875 U-box Gene Family AT2G45910 52.0 1.1e-232 803.9
Tan06g0152 . 218 487 U-box Gene Family AT2G45910 51.9 1.0e-76 285.8
Tan08g0049 . 2 728 U-box Gene Family AT2G19410 50.8 1.6e-215 746.9
Tan07g0187 . 28 606 U-box Gene Family AT4G25160 55.2 2.6e-168 590.1
Tan11g0585 . 1 552 U-box Gene Family AT5G40140 55.3 1.4e-98 357.8
Tan05g2040 . 29 498 U-box Gene Family AT5G40140 51.9 4.1e-53 206.8
Tan01g2750 . 4 937 U-box Gene Family AT1G76390 53.5 8.2e-260 894.0
Tan01g2751 . 4 754 U-box Gene Family AT1G76390 53.7 3.4e-205 712.6
Tan01g2750 . 13 937 U-box Gene Family AT1G20780 53.6 5.4e-264 907.9
Tan01g2751 . 4 754 U-box Gene Family AT1G20780 53.2 5.7e-205 711.8
Tan02g2190 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan02g2191 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan04g0074 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0075 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0076 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0077 . 1 557 U-box Gene Family AT1G27910 51.1 1.9e-141 500.7
Tan03g1663 . 1 593 U-box Gene Family AT5G67530 75.8 1.4e-264 909.4
Tan10g0333 . 3 157 U-box Gene Family AT5G67530 52.9 9.9e-45 179.1
Tan08g1697 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan08g1698 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan07g0187 . 10 605 U-box Gene Family AT5G61560 50.4 2.1e-151 533.9
Tan07g0187 . 96 606 U-box Gene Family AT5G61550 58.6 3.7e-170 596.3
Tan07g0187 . 126 605 U-box Gene Family AT5G51270 57.7 3.3e-152 536.6
Tan10g0634 . 1 516 U-box Gene Family AT1G04510 70.7 9.5e-209 723.8
Tan10g0634 . 1 485 U-box Gene Family AT2G33340 69.4 2.5e-195 679.1
Tan07g2079 . 10 278 U-box Gene Family AT3G07370 66.9 5.9e-101 364.8
Tan02g1421 . 1 1043 U-box Gene Family AT5G15400 76.4 0.0e+00 1578.5
Tan06g1105 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan06g1106 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan05g1595 . 206 839 U-box Gene Family AT2G23140 65.8 2.8e-122 436.8
Tan02g2190 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan02g2191 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan04g0074 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0075 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0076 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0077 . 1 374 U-box Gene Family AT1G24330 63.5 1.3e-129 461.5
Tan02g2190 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan02g2191 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan04g0074 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0075 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0076 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0077 . 1 374 U-box Gene Family AT1G67530 63.0 1.4e-123 441.4
Tan03g2387 . 1 360 U-box Gene Family AT4G21350 63.2 1.1e-121 434.1
Tan07g2078 . 134 456 U-box Gene Family AT3G07360 56.1 5.0e-83 305.4
Tan06g1828 . 260 455 U-box Gene Family AT1G71020 69.7 3.3e-75 280.0
Tan04g1579 . 267 454 U-box Gene Family AT1G71020 72.5 4.8e-74 276.2
Tan11g1796 . 712 904 U-box Gene Family AT1G71020 54.8 3.9e-52 203.4
Tan04g0628 . 250 417 U-box Gene Family AT1G71020 59.6 1.6e-48 191.4
Tan05g0377 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan05g0378 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan01g2462 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Tan04g1579 . 5 658 U-box Gene Family AT1G23030 56.3 1.3e-111 401.4
Tan06g1828 . 5 659 U-box Gene Family AT1G23030 56.9 8.2e-111 398.7
Tan05g0377 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan05g0378 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan01g2462 . 93 632 U-box Gene Family AT2G28830 59.2 5.6e-101 365.9
Tan01g2462 . 1 634 U-box Gene Family AT3G46510 70.1 3.5e-168 589.3
Tan05g0377 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan05g0378 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan04g0628 . 7 624 U-box Gene Family AT3G46510 59.0 9.7e-126 448.4
Tan04g0628 . 1 626 U-box Gene Family AT3G54850 68.7 3.1e-166 582.8
Tan05g0377 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan05g0378 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan01g2462 . 8 639 U-box Gene Family AT3G54850 54.5 6.5e-103 372.5
Tan05g1058 . 28 650 U-box Gene Family AT5G42340 60.0 3.6e-120 429.9
Tan03g0722 . 9 672 U-box Gene Family AT5G01830 57.8 1.5e-203 706.8
Tan05g2530 . 1 716 U-box Gene Family AT1G29340 63.8 2.9e-248 855.5
Tan04g2057 . 27 442 U-box Gene Family AT5G37490 51.6 3.1e-112 402.9
Tan08g1621 . 2 404 U-box Gene Family AT3G52450 52.0 9.5e-122 434.5
Tan03g0650 . 11 424 U-box Gene Family AT3G52450 53.6 4.7e-121 432.2
Tan08g1621 . 2 404 U-box Gene Family AT2G35930 55.1 2.5e-124 443.0
Tan03g0650 . 10 424 U-box Gene Family AT2G35930 53.0 7.1e-119 424.9
Tan01g0691 . 7 422 U-box Gene Family AT3G19380 65.0 1.2e-148 523.9
Tan01g0691 . 1 422 U-box Gene Family AT1G49780 65.0 6.6e-152 534.6
Tan03g1327 . 1 411 U-box Gene Family AT5G64660 54.5 7.1e-122 434.9
Tan03g1327 . 1 411 U-box Gene Family AT5G09800 51.3 9.0e-106 381.3
Tan01g4675 . 1 455 U-box Gene Family AT3G49810 63.4 3.6e-156 548.9
Tan02g1715 . 1 452 U-box Gene Family AT3G49810 62.8 8.2e-153 537.7
Tan01g4675 . 1 455 U-box Gene Family AT5G65920 62.7 4.1e-152 535.4
Tan02g1715 . 1 452 U-box Gene Family AT5G65920 63.8 5.3e-152 535.0
Tan01g0233 . 113 605 U-box Gene Family AT3G49060 50.3 2.4e-131 467.2
Tan10g0201 . 1 875 U-box Gene Family AT2G45910 52.0 1.1e-232 803.9
Tan06g0152 . 218 487 U-box Gene Family AT2G45910 51.9 1.0e-76 285.8
Tan08g0049 . 2 728 U-box Gene Family AT2G19410 50.8 1.6e-215 746.9
Tan07g0187 . 28 606 U-box Gene Family AT4G25160 55.2 2.6e-168 590.1
Tan11g0585 . 1 552 U-box Gene Family AT5G40140 55.3 1.4e-98 357.8
Tan05g2040 . 29 498 U-box Gene Family AT5G40140 51.9 4.1e-53 206.8
Tan01g2750 . 4 937 U-box Gene Family AT1G76390 53.5 8.2e-260 894.0
Tan01g2751 . 4 754 U-box Gene Family AT1G76390 53.7 3.4e-205 712.6
Tan01g2750 . 13 937 U-box Gene Family AT1G20780 53.6 5.4e-264 907.9
Tan01g2751 . 4 754 U-box Gene Family AT1G20780 53.2 5.7e-205 711.8
Tan02g2190 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan02g2191 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan04g0074 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0075 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0076 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0077 . 1 557 U-box Gene Family AT1G27910 51.1 1.9e-141 500.7
Tan03g1663 . 1 593 U-box Gene Family AT5G67530 75.8 1.4e-264 909.4
Tan10g0333 . 3 157 U-box Gene Family AT5G67530 52.9 9.9e-45 179.1
Tan08g1697 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan08g1698 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan07g0187 . 10 605 U-box Gene Family AT5G61560 50.4 2.1e-151 533.9
Tan07g0187 . 96 606 U-box Gene Family AT5G61550 58.6 3.7e-170 596.3
Tan07g0187 . 126 605 U-box Gene Family AT5G51270 57.7 3.3e-152 536.6
Tan10g0634 . 1 516 U-box Gene Family AT1G04510 70.7 9.5e-209 723.8
Tan10g0634 . 1 485 U-box Gene Family AT2G33340 69.4 2.5e-195 679.1
Tan07g2079 . 10 278 U-box Gene Family AT3G07370 66.9 5.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004862 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 0 38