Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g2387 | ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGGTCTTCAATCCAACGGTGGCTCGACGCCGGTCACCGGACTTGTCCGATCACCCAATTGCCCCTTCCTCAAAACCCTTCTCTAATCCCTAACCATGCCCTCAGGAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTTATCTCTCCTTCTTCCTCCCTCGATTCAAGGCTCGATTGCCTCAATCAACTCGCGAGGGTTTCAAAGCGCGATTCCGCTATGCGAAGAAAATTGACCGAGTCCGGTGCCGTCTCGGCCGTTCTTAAATGCGTCGGTTCCGACGATCCGAGCCTCCAAGAGAAAGCGCTGTCCCTGTTGCTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCGATTGGGCTGACCGTGGCGGCTCTTCAAGCCAGGTCCCCCGATTGCAGAGCCGTAGCCGCCACGATGCTAACGAGCTTAGCCGTTGTGGAGGTTAACAAGGCAACAATTGGGGCATATCCCTACGCGATTCGCTCTCTCGTTTTTCTCTTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCAGCAACTGCCCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCAGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATAGCCAATTCGGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGGTTCAATGGAATTGTGGAGATTTTGGGACGTGTTTTAAGAAATGGAACCCCAAGAGGAGTTCAATATGCTCTTATAACGCTGAGTTCTCTCTGCTGCCACAGCGAGCGAACATGCGTGGAAGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGAGCAAACAACACATGA | 1098 | 50.46 | MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSRLDCLNQLARVSKRDSAMRRKLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVFLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGLLAKCREGREEMQRFNGIVEILGRVLRNGTPRGVQYALITLSSLCCHSERTCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRANNT | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 77615744 | 77617383 | - | Tan0016666.1 | Tan03g2387 | 747891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g2387 | 365 | Gene3D | - | 270 | 365 | IPR011989 | - | |
Tan03g2387 | 365 | Gene3D | - | 87 | 211 | IPR011989 | - | |
Tan03g2387 | 365 | Gene3D | - | 212 | 269 | IPR011989 | - | |
Tan03g2387 | 365 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan03g2387 | 365 | PANTHER | U BOX DOMAIN-CONTAINING | 6 | 361 | - | - | |
Tan03g2387 | 365 | CDD | RING-Ubox_PUB | 6 | 53 | IPR045210 | - | |
Tan03g2387 | 365 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 129 | 171 | IPR000225 | GO:0005515(InterPro) | |
Tan03g2387 | 365 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan03g2387 | 365 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan03g2387 | 365 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 76 | IPR013083 | - | |
Tan03g2387 | 365 | SUPERFAMILY | ARM repeat | 89 | 360 | IPR016024 | - | |
Tan03g2387 | 365 | SUPERFAMILY | RING/U-box | 3 | 72 | - | - | |
Tan03g2387 | 365 | SMART | arm_5 | 279 | 320 | IPR000225 | GO:0005515(InterPro) | |
Tan03g2387 | 365 | SMART | arm_5 | 118 | 158 | IPR000225 | GO:0005515(InterPro) | |
Tan03g2387 | 365 | SMART | arm_5 | 200 | 241 | IPR000225 | GO:0005515(InterPro) | |
Tan03g2387 | 365 | SMART | arm_5 | 159 | 199 | IPR000225 | GO:0005515(InterPro) | |
Tan03g2387 | 365 | FunFam | RING-type E3 ubiquitin transferase | 4 | 76 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3668 | Tan-Chr1:101555408 | Tan03g2387 | Tan-Chr3:77615744 | 4.40E-07 | dispersed | |
Tan03g2387 | Tan-Chr3:77615744 | Tan11g0293 | Tan-Chr11:2314913 | 5.50E-46 | dispersed | |
Tan03g2387 | Tan-Chr3:77615744 | Tan05g2026 | Tan-Chr5:70391221 | 1.30E-31 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g2387 | K27970 | - | csv:101213883 | 627.091 |