Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2388 ATGGGTAGTAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTCATTCTTCCTCTGTTCTTCTCCTCTGTTTTGTGACGCTGCAAATTCAATCACGAGGGGCAGAGATTTAAGAGACAGTGCTAATGAAACTCTCATATCCGAAAATGAGTCCTACGAGCTGGGGTTCTTCAGTCCCAAAAATTCTTCTTCACGATATGTTGGTATATGGTATCACAAGATCGACGAACAGTCCGTTATTTGGGTTGCAAATAGAGATAAACCACTTCTTAATAGAGATGGGGTTTTGAAAATCGGAGACGACGGGAACTTGGTCGTTCTAGATGGCAACAACGTCTCTGTTTGGACAAGCAATATCACAGCGAATGCGTCTGATCCGAGGAACTTAACTCTGCATCACAATGGAGAATTGATTCTCTCGAGCGACGACGACCCGTCGAAAGTCCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGTGGTGCGAGTGAGATCAGATATGGGTGCAAAACGGATTTTTATGTCGTGGAAGTCAGAGACAAATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCTCGTGGAGCCGTACAGATTATCATTTGGAATGGGAAAAATCGATGGTGGCGAAGCGGCCACTGGGATAGGCAGATTTTTTCTGGGATTCCAACTATGCGTTCTACGTCTTTGTACGGTTTCAAGGTTACCCCCGAAAATGGAAATGTAAGTGTAACTTTTCATCCATTGAATGATTCTGATAAGCTGAAATTTCAAATACGGTGGGATGGTAAAGAAGCACAGCAACGATGGAACGAAGCGAATCGGGTATGGGAAACTATTCGTTTACTGCCTTCTAACGATTGCGATTTCTATAATTTTTGTGGGGATTTTGGGATTTGCTCTGAAACAAGTCGCCCCAAGTGTAGTTGCCCTCAAGGGTTTATACCAAAAAACGACGATCAATGGAAGAGAGGGATTTGGTCGGATGGGTGTCAGAGGAAGACTCCATTACTTCAGCAGAGGATGAACAGTAATCCGAATGGCACTGTTGAAGATGGTGAACAAGATGGGTTTGCGGCTGTACAGTTTGTGAAATTGCCCGATTTCATAACTACGGTATCTGTGGATTCTTGTAGAGATAGATGTGCGAACAGTTCTTCGTGTCTTGCATATTCTGATGCTCCTGGAATTGGGTGCCTTACCTGGGATGGACCTTTAATTGATATTCAGAGATTTGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTAGATAACGAGAGCAAATTGTCGACCTGGGTGATAGTATTGATATGTTTTGGGGGAGCAGCTGCCATAGCCATTCTAGCATTGCTGCTATGGAAATTCAGAGGCAAAATGAAAGCTCCACCAGCTTCTGCTTCGAGTAAACCTCAGAACAACACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAATTTTCAGCAGAGCTTTCAGGGCCATACGATTTAGGCAGAGAAGGCGAACAATTGAGCGGACCAGATTTGCCAATGTTCAATTTCAACTGCATAGCTGTGGCTACTGATAATTTTTCCGAGGAAAACAAGCTTGGCCAGGGAGGTTTTGGCCCAGTATACAGGGGAAAGCTTCCATGTGGACAAGAAATTGCTGTGAAGAGGCTCTCAGTCCGGTCTGGTCAAGGTCTAGAAGAGTTTAAAAATGAGATTATACTGATAGGAAAGTTGCAGCATCGGAACCTCGTCAGACTGTTGGGCTATTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAATAAAAGCTTGGATTGGTTTCTTTTTGATCCAAATAAGCAGGCACTATTGGATTGGAAAAAACGGTTATCAATCATCGAGGGAATTGCTCGAGGACTGCTATATCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGACTTGAAAGCTAGCAACATTTTGCTAGACGAAGACATGAATCCCAAGATATCAGATTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCAACAAATACAATTCGAGTTGTTGGCACATACGGTTACATGGCTCCTGAGTATGCAATGGAAGGTTTATTTTCGGTAAAATCAGATGTCTATAGTTTTGGAGTATTATTATTGGAATTAATCTGTGGTCGGAGGAACACTAGCTTTCGCTCCACTGAATACTTAACCCTTATTAGCTATGCTTGGAAACTTTGGAATGATGGAAGAGCAATTGAACTTCTCGACCCGTCGATTCGCGATTCATCCCCCGAGAATGAAGTATTGAAATGCATACATGTAGCAATGTTGTGTGTACAAGACTCCCCAGCATATAGACCAACACTGCAGTCCTTGGTGCTAATGCTGGAGAGTGAATCAACTTCTCTGCCGCAGCCAAGACAGCCCACCTATACTTCCACAAGAGCCTCGATCGACACGGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACGTAACGGTAACAATGCTGGATGGTAGATAG 2577 43.38 MGSNCRKVVGFLQFFVISFFLCSSPLFCDAANSITRGRDLRDSANETLISENESYELGFFSPKNSSSRYVGIWYHKIDEQSVIWVANRDKPLLNRDGVLKIGDDGNLVVLDGNNVSVWTSNITANASDPRNLTLHHNGELILSSDDDPSKVHWSSFEHPTDTFLPNMVVRVRSDMGAKRIFMSWKSETNPAVGNYCLGVDPRGAVQIIIWNGKNRWWRSGHWDRQIFSGIPTMRSTSLYGFKVTPENGNVSVTFHPLNDSDKLKFQIRWDGKEAQQRWNEANRVWETIRLLPSNDCDFYNFCGDFGICSETSRPKCSCPQGFIPKNDDQWKRGIWSDGCQRKTPLLQQRMNSNPNGTVEDGEQDGFAAVQFVKLPDFITTVSVDSCRDRCANSSSCLAYSDAPGIGCLTWDGPLIDIQRFDGVGNTLNIRLAHSDLISVDNESKLSTWVIVLICFGGAAAIAILALLLWKFRGKMKAPPASASSKPQNNTEVPMFDLSKSREFSAELSGPYDLGREGEQLSGPDLPMFNFNCIAVATDNFSEENKLGQGGFGPVYRGKLPCGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWKLWNDGRAIELLDPSIRDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTVTMLDGR 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77627159 77631220 - Tan0016437.1 Tan03g2388 747892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2388 858 SMART blect_4 39 159 IPR001480 -
Tan03g2388 858 CDD PAN_AP_plant 359 432 - -
Tan03g2388 858 SMART ntp_6 361 431 IPR003609 -
Tan03g2388 858 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544(InterPro)
Tan03g2388 858 SUPERFAMILY Protein kinase-like (PK-like) 525 835 IPR011009 -
Tan03g2388 858 PIRSF SRK 4 858 IPR024171 GO:0004674(InterPro)
Tan03g2388 858 CDD B_lectin 43 159 IPR001480 -
Tan03g2388 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 511 615 - -
Tan03g2388 858 ProSiteProfiles PAN/Apple domain profile. 361 432 IPR003609 -
Tan03g2388 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 616 819 - -
Tan03g2388 858 Pfam Domain of unknown function (DUF3403) 813 858 IPR021820 GO:0004674(InterPro)
Tan03g2388 858 Gene3D Phosphorylase Kinase; domain 1 515 615 - -
Tan03g2388 858 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 824 - -
Tan03g2388 858 Gene3D Transferase(Phosphotransferase) domain 1 616 829 - -
Tan03g2388 858 Pfam PAN-like domain 362 417 IPR003609 -
Tan03g2388 858 Pfam D-mannose binding lectin 82 185 IPR001480 -
Tan03g2388 858 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Tan03g2388 858 Pfam Protein tyrosine and serine/threonine kinase 543 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2388 858 CDD STKc_IRAK 546 812 - -
Tan03g2388 858 CDD EGF_CA 294 326 - -
Tan03g2388 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2388 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Tan03g2388 858 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Tan03g2388 858 Gene3D - 28 156 IPR036426 -
Tan03g2388 858 SMART serkin_6 540 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2388 858 ProSiteProfiles Bulb-type lectin domain profile. 33 155 IPR001480 -
Tan03g2388 858 ProSiteProfiles Protein kinase domain profile. 540 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2388 Tan-Chr3:77627159 Tan03g2390 Tan-Chr3:77627159 0.00E+00 dispersed
Tan05g0834 Tan-Chr5:6404285 Tan03g2388 Tan-Chr3:77627159 2.30E-73 dispersed
Tan03g2388 Tan-Chr3:77627159 Tan03g2389 Tan-Chr3:77627159 0.00E+00 tandem
Tan04g1539 Tan-Chr4:23105105 Tan03g2388 Tan-Chr3:77627159 3.10E-85 transposed
Tan03g2388 Tan-Chr3:77627159 Tan05g3187 Tan-Chr5:83916792 1.10E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67388 PF07714 PK_Tyr_Ser-Thr 2.30E-47 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2388 - - - 0.0