Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2439 ATGGGTTCTGCAAATTGGAATTTGTCCATGTTTATGAACATCCTAATTGGTCTGCTTTTGGTCTTCTTCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATTACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGATCAATTCGAGTCAATAATATCAATGGATCTCAGCAACAACCATATTGGGGGGAATATTCCGTCTACATTGCCCGCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAATTCACTGGAAGCATTCCCTCTGCACTGGCCTCGCTAACACAATTGATGGACTTGTCATTAAACAATAATCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCAGCTTAATGGCTTGAATAACTTGGACTTGTCTGGCAACAACTTGAGTGGCCAGTTGCCTTCCTCGGTGGCCGATTTGTTCTCTCTTACTACATTGCACTTGCAGAACAATCAACTTTCTGGAATGCTCGACCCTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCCATACCTGCAAAGTTGTTAGGCATTTCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACAATAATTCCATCTGCACCTGCATTAGCCCCCTCACCATTTGCTGTGGCACCGGTGACCATGGGACAACCGGCCAGACAGACAGGCGCTGGTCAGCCGTTGTCATCAGGAAATCCTGAATCAGATGGAGCAAAGAGTTTTTTCTCTGCTAGGCGGATCATTTGGATCGTTATTATTGGCACGGTAATACTAATGGCATTGGGATTCTGTCTTCTCATGTGGATATGCTTGAAAAGAAGCAAGCATCGAGAAGACGCCAAGATGGTTCATGACAACACTGATATGGCTTCTAAATATAAGACTAAACCCATGAAGCCCCCAGTTGAAATTGATGACATGGAGAAAGGTCAAAGGGAGACCAATTTTAAGCCACTTGATAGAGATAGGATGAAGGATGGAATAATGGATTTTACCACCCCGAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATATGAGTTTTCGTAAAGACCATACAGAGAGTTCGAGCATAAGCATAGATGACTTACCTGCACCTCCTCCTCTGCCTCCTTTTCCGCTCCTTTCAACTCAGGAGGTTGCAAAACCACTTGTGTCAGCTGAAGTATCTAGTAGAGCACCTAAAAAACTGAACTCAAGTTCTTTCAAACTTTTCACAATTGCATCACTTCAGCAGTATACTAATAGTTTCTCTGAAGACAATCTTCTTGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAGCTGAATGGATCCTCTTCAACTCGTTGGAGTGATGAAGTATTTCACAACCTCATAACTAATATATGCAAAATTCGGCACGATAACATTGTGGAGCTTGTGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCTCACTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAAAAGCTTTCATGGAATGTACGAGTGAGGATTGCACTTGGGGCTGCTCGAGCCCTCGAGTATCTACATGAGGCCTGTCAACCACCTTTTATGCACCAAAATTTTAAGTCTGGTAACATTCTCTTGGACAATGAGCTAAAAGCACAGGTCTCCGACTCTGGCTTAGCTCCGCTGCTTTCTTCAGCTAGTCAGTCATCTACGCGTTTCCTCCCAGTTCATGGTTATAGTGCTCCTGAATTTGAGTCAGGAACTTACACGTGCCAAAGTGATATTTTTAGTTTTGGAGTTGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCATGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGTTGGGCTGTTCCAAGGCTCCATGATATCGATGCGTTATCAAGAATGGTTGATCCATCTCTTAATGGAACGTATCCCATTAAGTCGTTATCGCGCTTTGCTGATATTATTTGCTCTTGTATAATGAGAGAACCCGAATTTCGGCCCCCAATCTCAGAAATTGTACAGGAACTCTTACAAATGCTCTAG 2265 43.27 MGSANWNLSMFMNILIGLLLVFFNPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPSALASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNNLDLSGNNLSGQLPSSVADLFSLTTLHLQNNQLSGMLDPLQDLPLSDLNIENNLFSGPIPAKLLGISNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTMGQPARQTGAGQPLSSGNPESDGAKSFFSARRIIWIVIIGTVILMALGFCLLMWICLKRSKHREDAKMVHDNTDMASKYKTKPMKPPVEIDDMEKGQRETNFKPLDRDRMKDGIMDFTTPRLHDRQDTNGKRKDASNMSFRKDHTESSSISIDDLPAPPPLPPFPLLSTQEVAKPLVSAEVSSRAPKKLNSSSFKLFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLNGSSSTRWSDEVFHNLITNICKIRHDNIVELVGYCAEHGQYLLIYEYCKNGSLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPFMHQNFKSGNILLDNELKAQVSDSGLAPLLSSASQSSTRFLPVHGYSAPEFESGTYTCQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGTYPIKSLSRFADIICSCIMREPEFRPPISEIVQELLQML 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77945359 77950634 + Tan0015027.1 Tan03g2439 747943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2439 754 ProSiteProfiles Protein kinase domain profile. 478 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2439 754 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 445 555 - -
Tan03g2439 754 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 556 754 - -
Tan03g2439 754 PANTHER LEUCINE RICH REPEAT KINASE 2 73 752 IPR051420 -
Tan03g2439 754 MobiDBLite consensus disorder prediction 389 418 - -
Tan03g2439 754 MobiDBLite consensus disorder prediction 271 291 - -
Tan03g2439 754 Gene3D Transferase(Phosphotransferase) domain 1 556 754 - -
Tan03g2439 754 MobiDBLite consensus disorder prediction 389 426 - -
Tan03g2439 754 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515(InterPro)
Tan03g2439 754 SUPERFAMILY Protein kinase-like (PK-like) 457 750 IPR011009 -
Tan03g2439 754 ProSiteProfiles Leucine-rich repeat profile. 193 215 IPR001611 GO:0005515(InterPro)
Tan03g2439 754 SUPERFAMILY L domain-like 37 239 - -
Tan03g2439 754 Pfam Protein tyrosine and serine/threonine kinase 482 750 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2439 754 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 32 258 - -
Tan03g2439 754 Gene3D Ribonuclease Inhibitor 41 258 IPR032675 -
Tan03g2439 754 MobiDBLite consensus disorder prediction 274 291 - -
Tan03g2439 754 Pfam Leucine Rich Repeat 100 118 IPR001611 GO:0005515(InterPro)
Tan03g2439 754 Gene3D Phosphorylase Kinase; domain 1 441 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0248 Tan-Chr2:2140398 Tan03g2439 Tan-Chr3:77945359 4.80E-156 dispersed
Tan02g0249 Tan-Chr2:2140398 Tan03g2439 Tan-Chr3:77945359 4.80E-156 dispersed
Tan03g2439 Tan-Chr3:77945359 Tan03g2441 Tan-Chr3:77945359 0.00E+00 dispersed
Tan03g2439 Tan-Chr3:77945359 Tan03g2440 Tan-Chr3:77945359 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan05g2855 . 388 680 Strubbelig Receptor Gene Family AT1G11130 53.7 2.5e-84 310.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan04g2828 . 4 710 Strubbelig Receptor Gene Family AT1G53730 61.7 1.8e-213 740.0
Tan06g0048 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.3 4.8e-195 678.7
Tan11g2046 . 24 671 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-145 512.7
Tan04g2828 . 11 714 Strubbelig Receptor Gene Family AT3G14350 51.9 2.4e-183 639.8
Tan06g0048 . 10 702 Strubbelig Receptor Gene Family AT3G14350 57.4 3.3e-177 619.4
Tan05g2855 . 336 710 Strubbelig Receptor Gene Family AT4G22130 82.2 4.8e-174 608.6
Tan04g2828 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-119 426.8
Tan06g0048 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.5 4.5e-116 416.0
Tan02g0246 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0247 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0248 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0249 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan11g2046 . 368 685 Strubbelig Receptor Gene Family AT4G22130 56.3 1.2e-100 364.8
Tan03g2439 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2440 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2441 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67391 PF07714 PK_Tyr_Ser-Thr 5.20E-38 CL0016 Tan PK