Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2483 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACGGTTTATCATCGATGGGACTCATTAAGATTGAACCCTGTTCCTTTCATCATCGAACCACCTCGCAATTCCGGCTTGAAATCGAGGCCTCAGTCAACTTCATCTCCCCAGAAACTGAATCCTGATATTTCGAAGATTCAACGAAGTTTCATATCCAACAAGCAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAACCTCTCTGAAGTTTTCGAGGAAGCAAAATCCGCGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAGCGAACGAAGGAATTCAAGAAGAAGCTATTCAACAAGGAACCTCAAGATTCAAAATCGGCCAATTTCAAGCCATCGTTGAATACCAGTCCTCTGAAACACCTAGCCACCGCGAAAGGGAGTGATAAGTCTAAGTTCCGGAGGGACTCATCCTGGACCAAGTATTTTGAGTCCGGAGGTGGAAGAGTCACCGCCGTGGAAACGGCCGATGACTGGAGTGTTGATCTCTCCGAGTTGTTTCTTGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAAGGAGGAACCTGTTGCTGTTAAAATTATTCGAGTGCCTGAGGACGACGAAAATGGAGTGCTTGGTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACTCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCGGCCTGTAGGAAGCCGCCAGTTTACTGTATCATTACTGAATATTTATCTCAAGGATCATTAAGGGCATACTTGCACAAACTTGAGCACCAATCTCTTCCTTTGCATAAACTAATTGCAATTGCTTTAGATGTCGCTCGTGGCATGGAATACATTCACTCACAAGGCATAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGACGAGGACTTCCATCTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCTGATGATCCCGGAACTTATCGATGGATGGCACCAGAGATGATCAAACATAAACCCTATGGCCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATCTCAAGTGATTGCCCATTGGCAATGCGAGCATTGATTGAGCAATGTTGGTCCATAAATCCAGACAAGAGACCCGATTTCTGGCAGGTTGTGAAGGTATTAGAGCAATTCGAGTCTTCGCTTGCCCATGATGGCTCACTGAATTTAATAGGGAACCCTCTGTCTAGTTTCCAAGACCATAAGAAAGGGCTCCTCCATTGGATTCAAAAGCTTGGTCCCCTACATCCTGAAGCGTTGCCCGTCCCCAAACCGAAATTCTCATAA 1479 44.83 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIIEPPRNSGLKSRPQSTSSPQKLNPDISKIQRSFISNKQRSLSPLPESNLSEVFEEAKSASKRFSTPTPRLRERTKEFKKKLFNKEPQDSKSANFKPSLNTSPLKHLATAKGSDKSKFRRDSSWTKYFESGGGRVTAVETADDWSVDLSELFLGLRFAHGAHSRLYHGKYKEEPVAVKIIRVPEDDENGVLGSRLEKQFTREVTLLSRLHHPNVIKFVAACRKPPVYCIITEYLSQGSLRAYLHKLEHQSLPLHKLIAIALDVARGMEYIHSQGIIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSINPDKRPDFWQVVKVLEQFESSLAHDGSLNLIGNPLSSFQDHKKGLLHWIQKLGPLHPEALPVPKPKFS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78269237 78273245 - Tan0014810.1 Tan03g2483 747987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2483 492 SMART serkin_6 183 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 MobiDBLite consensus disorder prediction 114 147 - -
Tan03g2483 492 MobiDBLite consensus disorder prediction 37 59 - -
Tan03g2483 492 Pfam Protein tyrosine and serine/threonine kinase 190 439 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
Tan03g2483 492 FunFam serine/threonine-protein kinase HT1 268 457 - -
Tan03g2483 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 MobiDBLite consensus disorder prediction 120 139 - -
Tan03g2483 492 CDD STKc_MAP3K-like 190 439 - -
Tan03g2483 492 MobiDBLite consensus disorder prediction 41 59 - -
Tan03g2483 492 FunFam Serine/threonine-protein kinase isoform 1 173 267 - -
Tan03g2483 492 Gene3D Transferase(Phosphotransferase) domain 1 268 461 - -
Tan03g2483 492 PANTHER SERINE-THREONINE PROTEIN KINASE 72 441 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Tan03g2483 492 SUPERFAMILY Protein kinase-like (PK-like) 166 439 IPR011009 -
Tan03g2483 492 ProSiteProfiles Protein kinase domain profile. 183 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2483 492 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2483 Tan-Chr3:78269237 Tan05g2017 Tan-Chr5:70162549 3.20E-97 dispersed
Tan03g2483 Tan-Chr3:78269237 Tan03g2484 Tan-Chr3:78269237 1.60E-234 tandem
Tan05g0514 Tan-Chr5:3547143 Tan03g2483 Tan-Chr3:78269237 6.70E-30 transposed
Tan10g0174 Tan-Chr10:1797450 Tan03g2483 Tan-Chr3:78269237 3.80E-24 transposed
Tan03g2483 Tan-Chr3:78269237 Tan05g3305 Tan-Chr5:84958429 2.80E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67394 PF07714 PK_Tyr_Ser-Thr 7.00E-60 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2483 - - - 0.0