Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2516 ATGCCTTTTGTTTCCTTCCTCTTCCTCTTCCTCTGTTTTCCTCTGTTTTCCTTTGCCCTCAACGAAGAGGGCCACGTTCTCCTCTCCTTTAAGCGCTCCATTGAGGATCGCAACAATGCCCTCTCCCTCTGGCACGACGCCGACCCTAATCCCTGTTCCTGGTACGGTATCACTTGCGACGCCAATCTTCACGTCATCTCCGTCGACCTTTCCAGCTCCCATATTTCTGCTCTTTTCCCTGCTTCTCTCTGTAACCTTCCCAATCTCCTCTACATTTCTCTTTACAACAATTCCTTACATTCCCTTGTTCCCGACCAGATCGCCACCTGCACCAATCTCGAGTACCTTGACCTTAGCCAAAATCTTCTCACCGGTCCTCTCCCTTCCTCCATTGGTCATCTTACCAATCTCCGTTACTTGGACTTGTCTGGCAATAATTTCTCCGGCCAAATACCACTCACCTTCTCTCGTTTACACAACCTTGAGGCCTTTTCCATTATTTTGAATCTTGTTGGGGGTTCCATTCCTCCTTTTCTTGGCAGCATTTCTACTCTTAGGATGTTGAATCTCTCTTACAACCCCTTTAATCCCGGTAGAATCCCGTCGGAGCTCGGTAATCTCGTCAATCTTGAGGTCCTTTGGTTGACGAATTGTAACTTAGAAGGGGAGATTCCTGACTCGTTAGGCCGGCTCAAGCACCTCGTCCTTCTTGATTTGAGCACGAACAGGCTTAGTGGGCCGTTCCCGGCGGCGCTGACGGACTTAACCCGCGTCACCCAGATTGAGTTGTTTAACAATTCGTTGTCCGGTGCGTTACCAAATGGGTTTTCGAAACTCAAGTCGTTGCGGATGCTCGACTTGTCGATGAACAAATTGGCTGGGCCAATTCCGGGTGAATTGTTTGAGTTGCCACTCGAAAGCCTTAATGTGTTTGAGAATCAGTTCGAGGGTAGCTTGCCGGAATGCATGGGGACCTCGAGGACTTTGATTGAGATCAAGCTTTTTGGGAACAGACTCACCGGAGAGTTACCGAGAGATTTGGGGAAATATTCGCCTCTGAAATCCTTAGACATTTCAGACAACTTCTTTACTGGCAGGCTTCCGGAGGCCCTGTGTAAGAACGGGAAACTGGTAGAGATAATGATGCTCAACAACCTGGTTTCCGGCGAACTCCCGTCGAGTCTCGGTGATTGCTACAGTCTGACCAGGATCCGATTAGGGAACAACAATTTTTCGGGTTATGTACCAGAAAATTTATGGGGACTTCCGGGTGTGGTTCTTCTGGAACTTACAAACAACAGCTTCTCTGGTCCAATCTCAAAGAAAATAGCCAATTCCAAGAAGCTGAGTTTGCTTCTTATTTCTCATAACAATTTCTCAGGAACAATTCCGGAGGAGATTGGTTCTTTGCAGAACATGGTAGAGTTTTCCGCTGACCACAACAAGTTCATAGGAAGTTTCCCCGAGAGCCTTACGAAAATGGGACGGCTTGCCAAGTTAGATCTTCAAAGAAACATGCTTTCCGGGTTGCTTAGCATTAGGCTTGAGGCCTGGGACAGGCTGAATGAGCTCAATCTGGCTAATAATAACTTCTCTGGGGAAATTCCCCGGGATATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGTAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTATCATACAATCACTTAACTGGGACGCTTCCTTCCTACTTCGAGACAACAGTGTACAAAAATAGCTTTCTGGGGAATCCTGGTTTGTGTAGGGAGGAAAATGGTGAGTGTAAACAAATTCAATCTAAAAGAAAAGTTGGAGGAGGAGGAGGAGGTTGCAATGAGGGAGGAGATTGCAATTGGTTGCTTCGACCTGTTCTTATATTTGCAAGTGTACTTTTCTTTGCGGGAGTGATTTTGATCCACATCAAGTATAGGAGATTCCTCAAGGCAAAAAGTCTCAACATCAAATCAAAATGGACGGTGATATCTTTCCACAAGCTCTCTTTTGGCGAGGACGAGATTGTGGATTCCCTGGATGAAGACAATGTGATAGGCAGTGGAGGCTCTGGCCAAGTTTACAAGGTTGCTCTCGGCAATGGCGAAATCATTGCAGTTAAGAAACTTTGGGCTGAGGTTCCCAGGGACCGCAAGAGCATCGATCTCGAGAACAATTGGACTGAAGATAATGTTTTTGATGCAGAAGTGAAGACTTTGGGTAAAATCAGGCATAACAACATTGTGAAACTCTGGTGTTGTTGTACCAATGGAGACTGCAAGCTTCTGGTCTATGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGAAGTAAAAGTGAGTTGTTGGATTGGCCTAGAAGATACAAGATAGCCTTGGATGCAGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCCAATTTCGGAGCTAGGATAGCAGATTTTGGTGTTGCTATGGCTGTGGATATATCCGAGAACAAATCCATGTCAGTGATTGCTGGTTCTTGTGGTTATATTGCCCCAGAGTATTCTTATACATTGAAAGTGAACGAGAAGAGCGACATCTTTAGCTACGGGATGGTTGTCCTTGAATTGATAACGGGGAGGCGCCCAACGGACCCCGAGTTTGAAGAAAACAATCTGGTGAAATGGGTATGCACCACGTTAGAACAGGAAGGCATAGACCATATTCTAGACCCCAAATTGGATTCATGTTACAAGGAGGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCAGCAGCCCTCTACCTATCAACCGCCCACCGATGAGACTAGTGGTTAAATCGTTGGAAGAAGTTCGTATGAATAGCCATTTGAAGATTGGCAAGAAAGAGGGAAAACTGACACCGTACTATTTCGAGGATGCTTCGGATAGCAGAAATGTGGTGTAA 3009 45.63 MPFVSFLFLFLCFPLFSFALNEEGHVLLSFKRSIEDRNNALSLWHDADPNPCSWYGITCDANLHVISVDLSSSHISALFPASLCNLPNLLYISLYNNSLHSLVPDQIATCTNLEYLDLSQNLLTGPLPSSIGHLTNLRYLDLSGNNFSGQIPLTFSRLHNLEAFSIILNLVGGSIPPFLGSISTLRMLNLSYNPFNPGRIPSELGNLVNLEVLWLTNCNLEGEIPDSLGRLKHLVLLDLSTNRLSGPFPAALTDLTRVTQIELFNNSLSGALPNGFSKLKSLRMLDLSMNKLAGPIPGELFELPLESLNVFENQFEGSLPECMGTSRTLIEIKLFGNRLTGELPRDLGKYSPLKSLDISDNFFTGRLPEALCKNGKLVEIMMLNNLVSGELPSSLGDCYSLTRIRLGNNNFSGYVPENLWGLPGVVLLELTNNSFSGPISKKIANSKKLSLLLISHNNFSGTIPEEIGSLQNMVEFSADHNKFIGSFPESLTKMGRLAKLDLQRNMLSGLLSIRLEAWDRLNELNLANNNFSGEIPRDIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNHLTGTLPSYFETTVYKNSFLGNPGLCREENGECKQIQSKRKVGGGGGGCNEGGDCNWLLRPVLIFASVLFFAGVILIHIKYRRFLKAKSLNIKSKWTVISFHKLSFGEDEIVDSLDEDNVIGSGGSGQVYKVALGNGEIIAVKKLWAEVPRDRKSIDLENNWTEDNVFDAEVKTLGKIRHNNIVKLWCCCTNGDCKLLVYEYMPNGSLGDMLHGSKSELLDWPRRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDANFGARIADFGVAMAVDISENKSMSVIAGSCGYIAPEYSYTLKVNEKSDIFSYGMVVLELITGRRPTDPEFEENNLVKWVCTTLEQEGIDHILDPKLDSCYKEEMLKVLNIGLLCSSPLPINRPPMRLVVKSLEEVRMNSHLKIGKKEGKLTPYYFEDASDSRNVV 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78512855 78516067 + Tan0021970.1 Tan03g2516 748020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2516 1002 ProSiteProfiles Protein kinase domain profile. 691 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2516 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 20 182 - -
Tan03g2516 1002 SMART LRR_typ_2 279 303 IPR003591 -
Tan03g2516 1002 SMART LRR_typ_2 207 231 IPR003591 -
Tan03g2516 1002 SMART LRR_typ_2 86 109 IPR003591 -
Tan03g2516 1002 SMART LRR_typ_2 134 157 IPR003591 -
Tan03g2516 1002 SMART LRR_typ_2 542 565 IPR003591 -
Tan03g2516 1002 Pfam Leucine rich repeat N-terminal domain 20 60 IPR013210 -
Tan03g2516 1002 FunFam Leucine-rich repeat receptor-like protein kinase 779 986 - -
Tan03g2516 1002 Gene3D Ribonuclease Inhibitor 274 613 IPR032675 -
Tan03g2516 1002 PRINTS Leucine-rich repeat signature 279 292 - -
Tan03g2516 1002 PRINTS Leucine-rich repeat signature 113 126 - -
Tan03g2516 1002 FunFam Receptor-like protein kinase HSL1 304 611 - -
Tan03g2516 1002 SMART serkin_6 691 991 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2516 1002 Gene3D Phosphorylase Kinase; domain 1 671 778 - -
Tan03g2516 1002 FunFam Receptor-like protein kinase HSL1 675 778 - -
Tan03g2516 1002 Gene3D Transferase(Phosphotransferase) domain 1 779 991 - -
Tan03g2516 1002 Pfam Protein kinase domain 694 912 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2516 1002 PANTHER RECEPTOR-LIKE PROTEIN 55 337 970 - -
Tan03g2516 1002 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524(InterPro)
Tan03g2516 1002 ProSiteProfiles Leucine-rich repeat profile. 136 157 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine rich repeat 67 123 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 567 587 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 400 422 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 353 373 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 281 302 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515(InterPro)
Tan03g2516 1002 Gene3D Ribonuclease Inhibitor 173 273 IPR032675 -
Tan03g2516 1002 FunFam Leucine-rich receptor-like protein kinase family protein 200 298 - -
Tan03g2516 1002 SUPERFAMILY Protein kinase-like (PK-like) 686 970 IPR011009 -
Tan03g2516 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2516 1002 SUPERFAMILY RNI-like 200 575 - -
Tan03g2516 1002 Gene3D Ribonuclease Inhibitor 20 172 IPR032675 -
Tan03g2516 1002 SUPERFAMILY L domain-like 20 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1453 Tan-Chr1:14636184 Tan03g2516 Tan-Chr3:78512855 5.00E-94 dispersed
Tan02g0401 Tan-Chr2:3423966 Tan03g2516 Tan-Chr3:78512855 6.20E-137 dispersed
Tan03g2516 Tan-Chr3:78512855 Tan06g2327 Tan-Chr6:74635291 4.50E-82 dispersed
Tan05g0540 Tan-Chr5:3779961 Tan03g2516 Tan-Chr3:78512855 4.70E-16 transposed
Tan09g1209 Tan-Chr9:64412203 Tan03g2516 Tan-Chr3:78512855 6.00E-71 transposed
Tan03g2516 Tan-Chr3:78512855 Tan05g2466 Tan-Chr5:75814122 5.20E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67396 PF00069 Pkinase 8.80E-41 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2516 - - - 0.0