Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2524 ATGGGTGCTCTCATCGATCTCAATACCACTGAAGAAGATGATGCTCCCTCTTCTGCTGGTTCCTCTGTTTCTTCGTCCTCCGCTTCTGCTTTAACTTCCTCCCCTTCGCCTTCTGTCACCTCCTCAATTTGCTTGGAGCTATGGCATGCCTGTGCTGGCCCTCTTACGTCTTTGCCGAAGAAAGGGAGTTTGGTTGTGTATTTTCCGCAGGGTCACTTGGAACAGATGCAAGAGTTTCCTGCCACGTCGGCCTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACGCTGAGGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCATTGTTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGCTGAAGGTGGCGAGAAGACCACAACACCCCACATGTTCTGCAAGACCCTTACTGCTTCAGACACTAGTACTCATGGAGGCTTCTCTGTCCCCAGACGTGCAGCTGAAGATTGCTTTCCGCCATTGGATTATAATCAACAAAGGCCTTCACAAGAACTTGTTGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGCGGTCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTCGTGAACAAGAAAAGGCTTGTTTCGGGTGATGCAGTGCTTTTTCTTAGGGGCAACGATGGGGAATTAAGGCTGGGGATTCGAAGAGCTGCGCAGCTTAAAAGTGGATCTGTCGTTTCTAATATTTGCAGCCAGCAGCTCAACTCTAGTAGTATCATGGATGTGGTTAATGCCGTATCTACAAAAAGTTCCTTTAGTGTATACTACAATCCCAGGGCTACCTCTTCACAGTTTGTTTTTCCTTTTCACAAGTTCTTGAAGAGCATTAACCATGCTTTTTCTGTTGGAATGAGGTTCAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGATACACTGGACATATAACTGGAGTTGGTGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGTGAAACTAACAAGCATGGCAGGGTTTCCCCCTGGGAGATTGAGCCCTCTGGTTCTATTTCTGTGTCTAGCAACTTGGTTCCACCTGGTTTGAAAAGGGCCAGGATTGGGCTCTCTCCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGATGGCGACGACAACACCCGTCATCCATCCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTCTGATGAGAAATGGTCCGAGAAACCCACTTATCAACTCTGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCGTTTTATGGTAGGGCCATAGCCACCAATGAAGTCAAGGCAAGTGGTGGTTGCGGTCCTGTCGATGGTGTTCGATTGTCTAGGTCTAAAGATGGATGGCCCATGACAATGCAGTGTGAAAATTTCCTCACACGCTCTTCCATTCCTTCTGTACAAGTCTCATCGCCATCATCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCTCATAACCGTGGCAATTTCGCAGAAAAGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATGACTGACCATAGCCCGAATACCGAAGTCCCACAAGGCATACATCCCACTTCATTGGGCGAGCAGAATCAGCTCGGCCTGTCACATCCTTCAACAACAGCACCGGCGTTTACTGGCAGTAAAGATCTGTCTTCAACTTGCAAAGCTGGCTGTAGATTGTTTGGTTTCTCATTGACAGAGGGAAAGAATGTTGGTAATACAGACATGGCTTCTCCAGCAGCAACTCCAATTAATGCAGGAACAACCACTGTCTTGTCCAATATTGGAGTACAATGTCCTTTGAAGTCTCCACTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTGTTCAGTACCATTTTCCAAATTACAGTACCTACTACTGA 2187 46.55 MGALIDLNTTEEDDAPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYFPQGHLEQMQEFPATSAYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEQMEHKMQEEMNNDSEEEDAEGGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSVVSNICSQQLNSSSIMDVVNAVSTKSSFSVYYNPRATSSQFVFPFHKFLKSINHAFSVGMRFRLSFETEDAADRRYTGHITGVGDVDPIRWPGSRWRSLMVRWDDGETNKHGRVSPWEIEPSGSISVSSNLVPPGLKRARIGLSPTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGDDNTRHPSEKRRLFPGLHGSGIALMRNGPRNPLINSETSSRGIVFDESFQFHKVLQGQEIFPSPFYGRAIATNEVKASGGCGPVDGVRLSRSKDGWPMTMQCENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSHNRGNFAEKRIMNKSTSHNSGTAFMTDHSPNTEVPQGIHPTSLGEQNQLGLSHPSTTAPAFTGSKDLSSTCKAGCRLFGFSLTEGKNVGNTDMASPAATPINAGTTTVLSNIGVQCPLKSPLMSKVVGSNCTKGAVQYHFPNYSTYY 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78575711 78581200 - Tan0009933.1 Tan03g2524 748028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2524 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 675 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan03g2524 728 Pfam Auxin response factor 277 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan03g2524 728 MobiDBLite consensus disorder prediction 126 146 - -
Tan03g2524 728 MobiDBLite consensus disorder prediction 1 36 - -
Tan03g2524 728 Gene3D - 149 253 IPR015300 -
Tan03g2524 728 FunFam Auxin response factor 149 253 - -
Tan03g2524 728 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677(InterPro)
Tan03g2524 728 Gene3D - 314 388 - -
Tan03g2524 728 SMART B3_2 151 253 IPR003340 GO:0003677(InterPro)
Tan03g2524 728 SUPERFAMILY DNA-binding pseudobarrel domain 146 257 IPR015300 -
Tan03g2524 728 MobiDBLite consensus disorder prediction 11 36 - -
Tan03g2524 728 CDD B3_DNA 149 251 IPR003340 GO:0003677(InterPro)
Tan03g2524 728 FunFam Auxin response factor 314 385 - -
Tan03g2524 728 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2524 Tan-Chr3:78575711 Tan05g0270 Tan-Chr5:2048686 2.70E-129 dispersed
Tan03g2524 Tan-Chr3:78575711 Tan03g2736 Tan-Chr3:80297074 1.30E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27099 PF02362 B3 1.60E-21 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2524 K14486 - csv:101220018 1285.01